Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 AC078925.2-201ENST00000624013 1973 ntBASIC16.42■□□□□ 0.22
HNF4AP41235 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.42■□□□□ 0.22
HNF4AP41235 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.42■□□□□ 0.22
HNF4AP41235 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 MRPL3P1-201ENST00000400109 1033 ntBASIC16.42■□□□□ 0.22
HNF4AP41235 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.42■□□□□ 0.22
HNF4AP41235 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.42■□□□□ 0.22
HNF4AP41235 KRT18P67-201ENST00000432816 1264 ntBASIC16.42■□□□□ 0.22
HNF4AP41235 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
HNF4AP41235 AC009078.2-202ENST00000463353 338 ntBASIC16.42■□□□□ 0.22
HNF4AP41235 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.42■□□□□ 0.22
HNF4AP41235 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
HNF4AP41235 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.42■□□□□ 0.22
HNF4AP41235 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 PCDHB17P-201ENST00000539533 2393 ntBASIC16.42■□□□□ 0.22
HNF4AP41235 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.42■□□□□ 0.22
HNF4AP41235 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.42■□□□□ 0.22
HNF4AP41235 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HNF4AP41235 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 AL118508.1-201ENST00000613502 2345 ntBASIC16.41■□□□□ 0.22
HNF4AP41235 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HNF4AP41235 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.41■□□□□ 0.22
HNF4AP41235 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 AC079328.2-201ENST00000561241 3354 ntBASIC16.41■□□□□ 0.22
HNF4AP41235 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.41■□□□□ 0.22
HNF4AP41235 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.41■□□□□ 0.22
HNF4AP41235 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.41■□□□□ 0.22
HNF4AP41235 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
HNF4AP41235 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.41■□□□□ 0.22
HNF4AP41235 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.41■□□□□ 0.22
HNF4AP41235 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.41■□□□□ 0.22
HNF4AP41235 AC004706.3-202ENST00000621574 984 ntBASIC16.41■□□□□ 0.22
HNF4AP41235 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.41■□□□□ 0.22
HNF4AP41235 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.41■□□□□ 0.22
HNF4AP41235 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HNF4AP41235 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
HNF4AP41235 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HNF4AP41235 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HNF4AP41235 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
HNF4AP41235 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.41■□□□□ 0.22
HNF4AP41235 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HNF4AP41235 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.4■□□□□ 0.22
HNF4AP41235 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.4■□□□□ 0.22
HNF4AP41235 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HNF4AP41235 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.4■□□□□ 0.22
HNF4AP41235 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms