Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A5P29400 USP32P1-208ENST00000506594 1164 ntBASIC19.95■□□□□ 0.78
COL4A5P29400 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.95■□□□□ 0.78
COL4A5P29400 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC19.95■□□□□ 0.78
COL4A5P29400 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC19.95■□□□□ 0.78
COL4A5P29400 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL4A5P29400 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A5P29400 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A5P29400 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A5P29400 AC016396.2-201ENST00000562575 1417 ntBASIC19.95■□□□□ 0.78
COL4A5P29400 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A5P29400 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A5P29400 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A5P29400 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.95■□□□□ 0.78
COL4A5P29400 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A5P29400 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC19.94■□□□□ 0.78
COL4A5P29400 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A5P29400 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC19.94■□□□□ 0.78
COL4A5P29400 AL033527.5-202ENST00000641632 1098 ntBASIC19.94■□□□□ 0.78
COL4A5P29400 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL4A5P29400 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A5P29400 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.94■□□□□ 0.78
COL4A5P29400 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A5P29400 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.94■□□□□ 0.78
COL4A5P29400 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
COL4A5P29400 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A5P29400 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL4A5P29400 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL4A5P29400 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 SLC25A6P5-201ENST00000435663 894 ntBASIC19.94■□□□□ 0.78
COL4A5P29400 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.94■□□□□ 0.78
COL4A5P29400 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.94■□□□□ 0.78
COL4A5P29400 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A5P29400 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A5P29400 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
COL4A5P29400 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
COL4A5P29400 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
COL4A5P29400 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.93■□□□□ 0.78
COL4A5P29400 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.93■□□□□ 0.78
COL4A5P29400 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC19.93■□□□□ 0.78
COL4A5P29400 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.93■□□□□ 0.78
COL4A5P29400 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC19.93■□□□□ 0.78
COL4A5P29400 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.93■□□□□ 0.78
COL4A5P29400 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC19.93■□□□□ 0.78
COL4A5P29400 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.93■□□□□ 0.78
COL4A5P29400 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.93■□□□□ 0.78
COL4A5P29400 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A5P29400 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.92■□□□□ 0.78
COL4A5P29400 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A5P29400 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
COL4A5P29400 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
COL4A5P29400 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.92■□□□□ 0.78
COL4A5P29400 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.92■□□□□ 0.78
COL4A5P29400 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.92■□□□□ 0.78
COL4A5P29400 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A5P29400 AC093724.1-201ENST00000448659 1027 ntBASIC19.92■□□□□ 0.78
COL4A5P29400 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A5P29400 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A5P29400 AC013467.2-201ENST00000605472 835 ntBASIC19.92■□□□□ 0.78
COL4A5P29400 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.92■□□□□ 0.78
COL4A5P29400 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A5P29400 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A5P29400 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.92■□□□□ 0.78
COL4A5P29400 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.92■□□□□ 0.78
COL4A5P29400 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms