Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.93■□□□□ 0.94
COL5A3P25940 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.93■□□□□ 0.94
COL5A3P25940 AL391069.4-201ENST00000609583 481 ntBASIC20.93■□□□□ 0.94
COL5A3P25940 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL5A3P25940 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.93■□□□□ 0.94
COL5A3P25940 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
COL5A3P25940 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.93■□□□□ 0.94
COL5A3P25940 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A3P25940 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.92■□□□□ 0.94
COL5A3P25940 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.92■□□□□ 0.94
COL5A3P25940 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.92■□□□□ 0.94
COL5A3P25940 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.92■□□□□ 0.94
COL5A3P25940 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL5A3P25940 RPSAP52-203ENST00000622976 1023 ntBASIC20.92■□□□□ 0.94
COL5A3P25940 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
COL5A3P25940 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
COL5A3P25940 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.92■□□□□ 0.94
COL5A3P25940 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
COL5A3P25940 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
COL5A3P25940 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL5A3P25940 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL5A3P25940 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.92■□□□□ 0.94
COL5A3P25940 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
COL5A3P25940 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A3P25940 MIR658-201ENST00000385210 100 ntBASIC20.92■□□□□ 0.94
COL5A3P25940 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20.92■□□□□ 0.94
COL5A3P25940 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.92■□□□□ 0.94
COL5A3P25940 KRT17P8-201ENST00000540749 863 ntBASIC20.92■□□□□ 0.94
COL5A3P25940 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC20.92■□□□□ 0.94
COL5A3P25940 GGT4P-201ENST00000623672 1708 ntBASIC20.91■□□□□ 0.94
COL5A3P25940 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COL5A3P25940 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A3P25940 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.91■□□□□ 0.94
COL5A3P25940 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A3P25940 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.91■□□□□ 0.94
COL5A3P25940 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.91■□□□□ 0.94
COL5A3P25940 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A3P25940 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.91■□□□□ 0.94
COL5A3P25940 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A3P25940 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A3P25940 CTBP2P3-201ENST00000585629 1255 ntBASIC20.91■□□□□ 0.94
COL5A3P25940 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.91■□□□□ 0.94
COL5A3P25940 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.91■□□□□ 0.94
COL5A3P25940 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.91■□□□□ 0.94
COL5A3P25940 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL5A3P25940 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A3P25940 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COL5A3P25940 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A3P25940 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A3P25940 AC087289.5-201ENST00000586076 3175 ntBASIC20.91■□□□□ 0.94
COL5A3P25940 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.91■□□□□ 0.94
COL5A3P25940 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.91■□□□□ 0.94
COL5A3P25940 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC20.9■□□□□ 0.94
COL5A3P25940 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.9■□□□□ 0.94
COL5A3P25940 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.9■□□□□ 0.94
COL5A3P25940 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC20.9■□□□□ 0.94
COL5A3P25940 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL5A3P25940 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.9■□□□□ 0.94
COL5A3P25940 CROCCP2-202ENST00000412962 2773 ntBASIC20.9■□□□□ 0.94
COL5A3P25940 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.9■□□□□ 0.94
COL5A3P25940 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.9■□□□□ 0.94
COL5A3P25940 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC20.9■□□□□ 0.94
COL5A3P25940 ANKRD19P-201ENST00000338192 862 ntBASIC20.9■□□□□ 0.94
COL5A3P25940 AC087499.6-201ENST00000411576 835 ntBASIC20.9■□□□□ 0.94
COL5A3P25940 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A3P25940 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.9■□□□□ 0.94
COL5A3P25940 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC20.9■□□□□ 0.94
COL5A3P25940 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.9■□□□□ 0.94
COL5A3P25940 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.9■□□□□ 0.94
COL5A3P25940 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL5A3P25940 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.89■□□□□ 0.94
COL5A3P25940 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC20.89■□□□□ 0.94
COL5A3P25940 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL5A3P25940 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms