Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A3P12111 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A3P12111 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A3P12111 AL591846.1-201ENST00000451736 433 ntBASIC17.3■□□□□ 0.36
COL6A3P12111 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A3P12111 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.3■□□□□ 0.36
COL6A3P12111 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A3P12111 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A3P12111 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 KRT8P12-202ENST00000472924 1397 ntBASIC17.29■□□□□ 0.36
COL6A3P12111 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A3P12111 AC131009.4-201ENST00000624048 1740 ntBASIC17.29■□□□□ 0.36
COL6A3P12111 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A3P12111 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 IQSEC3P1-201ENST00000538799 536 ntBASIC17.29■□□□□ 0.36
COL6A3P12111 AC079316.1-201ENST00000548397 411 ntBASIC17.29■□□□□ 0.36
COL6A3P12111 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
COL6A3P12111 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
COL6A3P12111 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
COL6A3P12111 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL6A3P12111 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A3P12111 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 ACTG1P3-201ENST00000431775 1114 ntBASIC17.29■□□□□ 0.36
COL6A3P12111 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.29■□□□□ 0.36
COL6A3P12111 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL6A3P12111 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A3P12111 TDH-203ENST00000531764 1110 ntBASIC17.29■□□□□ 0.36
COL6A3P12111 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.29■□□□□ 0.36
COL6A3P12111 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.29■□□□□ 0.36
COL6A3P12111 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A3P12111 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL6A3P12111 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.28■□□□□ 0.36
COL6A3P12111 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.28■□□□□ 0.36
COL6A3P12111 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.28■□□□□ 0.36
COL6A3P12111 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.28■□□□□ 0.36
COL6A3P12111 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
COL6A3P12111 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.28■□□□□ 0.36
COL6A3P12111 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.28■□□□□ 0.36
COL6A3P12111 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL6A3P12111 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC17.28■□□□□ 0.36
COL6A3P12111 PRYP6-201ENST00000514804 343 ntBASIC17.28■□□□□ 0.36
COL6A3P12111 AC134698.3-201ENST00000523880 214 ntBASIC17.28■□□□□ 0.36
COL6A3P12111 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.28■□□□□ 0.36
COL6A3P12111 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 AC006480.2-201ENST00000609770 1337 ntBASIC17.28■□□□□ 0.36
COL6A3P12111 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.28■□□□□ 0.36
COL6A3P12111 GNRHR2-203ENST00000581100 1187 ntBASIC17.28■□□□□ 0.36
COL6A3P12111 KLK3-211ENST00000597483 810 ntTSL 2 BASIC17.28■□□□□ 0.36
COL6A3P12111 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A3P12111 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A3P12111 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A3P12111 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
COL6A3P12111 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL6A3P12111 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.27■□□□□ 0.36
COL6A3P12111 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
COL6A3P12111 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL6A3P12111 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.27■□□□□ 0.35
COL6A3P12111 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A3P12111 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A3P12111 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC17.27■□□□□ 0.35
COL6A3P12111 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC17.27■□□□□ 0.35
COL6A3P12111 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.27■□□□□ 0.35
COL6A3P12111 DGAT2L7P-201ENST00000602462 744 ntBASIC17.27■□□□□ 0.35
COL6A3P12111 AL391069.4-201ENST00000609583 481 ntBASIC17.27■□□□□ 0.35
COL6A3P12111 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A3P12111 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A3P12111 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A3P12111 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL6A3P12111 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL6A3P12111 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL6A3P12111 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL6A3P12111 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL6A3P12111 Z93015.1-201ENST00000451718 390 ntBASIC17.26■□□□□ 0.35
COL6A3P12111 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC17.26■□□□□ 0.35
COL6A3P12111 NDUFV2P1-201ENST00000596415 907 ntBASIC17.26■□□□□ 0.35
COL6A3P12111 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.26■□□□□ 0.35
COL6A3P12111 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms