Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
APOEP02649 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
APOEP02649 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
APOEP02649 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
APOEP02649 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
APOEP02649 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
APOEP02649 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
APOEP02649 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
APOEP02649 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
APOEP02649 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
APOEP02649 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
APOEP02649 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.71■□□□□ 0.43
APOEP02649 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.71■□□□□ 0.43
APOEP02649 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
APOEP02649 MIR574-201ENST00000385209 96 ntBASIC17.71■□□□□ 0.43
APOEP02649 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
APOEP02649 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.71■□□□□ 0.43
APOEP02649 AC007967.2-201ENST00000432613 625 ntBASIC17.71■□□□□ 0.43
APOEP02649 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.71■□□□□ 0.43
APOEP02649 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.71■□□□□ 0.43
APOEP02649 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.71■□□□□ 0.43
APOEP02649 AC140113.2-201ENST00000604370 208 ntBASIC17.71■□□□□ 0.43
APOEP02649 FAM197Y3-203ENST00000618346 717 ntBASIC17.71■□□□□ 0.43
APOEP02649 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
APOEP02649 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
APOEP02649 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
APOEP02649 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
APOEP02649 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
APOEP02649 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
APOEP02649 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
APOEP02649 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.42
APOEP02649 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
APOEP02649 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
APOEP02649 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
APOEP02649 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.7■□□□□ 0.42
APOEP02649 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.7■□□□□ 0.42
APOEP02649 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
APOEP02649 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
APOEP02649 MIR940-201ENST00000401276 94 ntBASIC17.7■□□□□ 0.42
APOEP02649 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.7■□□□□ 0.42
APOEP02649 RNA5SP416-201ENST00000516838 111 ntBASIC17.7■□□□□ 0.42
APOEP02649 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.7■□□□□ 0.42
APOEP02649 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.7■□□□□ 0.42
APOEP02649 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 AC064836.3-201ENST00000607928 673 ntBASIC17.7■□□□□ 0.42
APOEP02649 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.7■□□□□ 0.42
APOEP02649 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
APOEP02649 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
APOEP02649 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.7■□□□□ 0.42
APOEP02649 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.7■□□□□ 0.42
APOEP02649 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
APOEP02649 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.69■□□□□ 0.42
APOEP02649 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.69■□□□□ 0.42
APOEP02649 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.69■□□□□ 0.42
APOEP02649 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
APOEP02649 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.69■□□□□ 0.42
APOEP02649 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
APOEP02649 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
APOEP02649 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
APOEP02649 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.69■□□□□ 0.42
APOEP02649 KRT18P3-201ENST00000451602 1288 ntBASIC17.69■□□□□ 0.42
APOEP02649 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOEP02649 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
APOEP02649 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.69■□□□□ 0.42
APOEP02649 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms