Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.22■□□□□ 0.19
SEMA3DO95025 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.22■□□□□ 0.19
SEMA3DO95025 AC078925.2-201ENST00000624013 1973 ntBASIC16.22■□□□□ 0.19
SEMA3DO95025 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SEMA3DO95025 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 MST1L-201ENST00000442552 2185 ntBASIC16.22■□□□□ 0.19
SEMA3DO95025 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.22■□□□□ 0.19
SEMA3DO95025 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.22■□□□□ 0.19
SEMA3DO95025 KRT18P27-201ENST00000427733 1299 ntBASIC16.22■□□□□ 0.19
SEMA3DO95025 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.22■□□□□ 0.19
SEMA3DO95025 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.22■□□□□ 0.19
SEMA3DO95025 AL121912.1-201ENST00000603683 238 ntBASIC16.22■□□□□ 0.19
SEMA3DO95025 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.22■□□□□ 0.19
SEMA3DO95025 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.22■□□□□ 0.19
SEMA3DO95025 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SEMA3DO95025 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.22■□□□□ 0.19
SEMA3DO95025 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
SEMA3DO95025 PCDHB17P-201ENST00000539533 2393 ntBASIC16.22■□□□□ 0.19
SEMA3DO95025 UBALD1-205ENST00000590891 2641 ntBASIC16.22■□□□□ 0.19
SEMA3DO95025 LINC00895-201ENST00000629028 1637 ntBASIC16.22■□□□□ 0.19
SEMA3DO95025 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SEMA3DO95025 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.21■□□□□ 0.19
SEMA3DO95025 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SEMA3DO95025 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.21■□□□□ 0.19
SEMA3DO95025 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.21■□□□□ 0.19
SEMA3DO95025 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SEMA3DO95025 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SEMA3DO95025 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.21■□□□□ 0.19
SEMA3DO95025 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.21■□□□□ 0.19
SEMA3DO95025 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.21■□□□□ 0.19
SEMA3DO95025 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.21■□□□□ 0.19
SEMA3DO95025 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.21■□□□□ 0.19
SEMA3DO95025 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.21■□□□□ 0.19
SEMA3DO95025 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.21■□□□□ 0.19
SEMA3DO95025 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.21■□□□□ 0.19
SEMA3DO95025 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
SEMA3DO95025 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.21■□□□□ 0.19
SEMA3DO95025 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.21■□□□□ 0.19
SEMA3DO95025 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
SEMA3DO95025 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SEMA3DO95025 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SEMA3DO95025 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
SEMA3DO95025 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
SEMA3DO95025 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.21■□□□□ 0.18
SEMA3DO95025 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SEMA3DO95025 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SEMA3DO95025 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
SEMA3DO95025 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SEMA3DO95025 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.21■□□□□ 0.18
SEMA3DO95025 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.21■□□□□ 0.18
SEMA3DO95025 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SEMA3DO95025 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.21■□□□□ 0.18
SEMA3DO95025 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SEMA3DO95025 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
SEMA3DO95025 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms