Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 SBF1P1-201ENST00000444527 5631 ntBASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 AL391807.1-203ENST00000604392 2365 ntBASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 AC111152.3-201ENST00000569699 673 ntBASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 AL136038.4-201ENST00000603606 1261 ntBASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 AC105917.1-201ENST00000506637 2539 ntBASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
KCNIP3Q9Y2W7 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 TUBB8P12-201ENST00000308911 1335 ntBASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 TUBB7P-202ENST00000428444 1305 ntBASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 TUBB8P7-204ENST00000567960 1332 ntBASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 MDFI-202ENST00000373050 809 ntTSL 2 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 AC068472.1-201ENST00000474589 881 ntBASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
KCNIP3Q9Y2W7 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 HLA-A-202ENST00000376806 1854 ntBASIC14.21□□□□□ -0.14
KCNIP3Q9Y2W7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 AC092364.2-201ENST00000596710 2692 ntBASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 AC132872.4-202ENST00000622924 2756 ntBASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.2□□□□□ -0.14
KCNIP3Q9Y2W7 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms