Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 AC241585.1-201ENST00000433527 519 ntBASIC18.79■□□□□ 0.6
VTA1Q9NP79 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 PRYP6-201ENST00000514804 343 ntBASIC18.79■□□□□ 0.6
VTA1Q9NP79 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 AC073592.8-201ENST00000624126 511 ntBASIC18.79■□□□□ 0.6
VTA1Q9NP79 AC008761.3-201ENST00000624803 892 ntBASIC18.79■□□□□ 0.6
VTA1Q9NP79 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VTA1Q9NP79 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VTA1Q9NP79 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 AC015922.1-201ENST00000421102 1152 ntBASIC18.78■□□□□ 0.6
VTA1Q9NP79 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 LINC02560-201ENST00000596379 459 ntBASIC18.78■□□□□ 0.6
VTA1Q9NP79 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 AC013467.2-201ENST00000605472 835 ntBASIC18.78■□□□□ 0.6
VTA1Q9NP79 AC007967.4-201ENST00000614700 386 ntBASIC18.78■□□□□ 0.6
VTA1Q9NP79 AF228730.6-201ENST00000641497 218 ntBASIC18.78■□□□□ 0.6
VTA1Q9NP79 AC084121.3-201ENST00000641716 218 ntBASIC18.78■□□□□ 0.6
VTA1Q9NP79 AC105233.6-201ENST00000642093 218 ntBASIC18.78■□□□□ 0.6
VTA1Q9NP79 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VTA1Q9NP79 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VTA1Q9NP79 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.77■□□□□ 0.6
VTA1Q9NP79 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.77■□□□□ 0.6
VTA1Q9NP79 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VTA1Q9NP79 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.77■□□□□ 0.6
VTA1Q9NP79 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
VTA1Q9NP79 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
VTA1Q9NP79 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
VTA1Q9NP79 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms