Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.58□□□□□ -0.08
COL12A1Q99715 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.58□□□□□ -0.08
COL12A1Q99715 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
COL12A1Q99715 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
COL12A1Q99715 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL12A1Q99715 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
COL12A1Q99715 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
COL12A1Q99715 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL12A1Q99715 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.58□□□□□ -0.08
COL12A1Q99715 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.58□□□□□ -0.08
COL12A1Q99715 FAM21FP-201ENST00000426241 1131 ntBASIC14.58□□□□□ -0.08
COL12A1Q99715 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC14.58□□□□□ -0.08
COL12A1Q99715 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.58□□□□□ -0.08
COL12A1Q99715 SLC25A47P1-201ENST00000531577 414 ntBASIC14.58□□□□□ -0.08
COL12A1Q99715 SRD5A3P1-201ENST00000603021 949 ntBASIC14.58□□□□□ -0.08
COL12A1Q99715 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL12A1Q99715 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.58□□□□□ -0.08
COL12A1Q99715 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
COL12A1Q99715 CETN4P-206ENST00000642099 2168 ntBASIC14.58□□□□□ -0.08
COL12A1Q99715 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL12A1Q99715 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.57□□□□□ -0.08
COL12A1Q99715 FO681548.1-201ENST00000455617 1132 ntBASIC14.57□□□□□ -0.08
COL12A1Q99715 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.57□□□□□ -0.08
COL12A1Q99715 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
COL12A1Q99715 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.57□□□□□ -0.08
COL12A1Q99715 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 RNU1-129P-201ENST00000384064 167 ntBASIC14.57□□□□□ -0.08
COL12A1Q99715 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.57□□□□□ -0.08
COL12A1Q99715 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.57□□□□□ -0.08
COL12A1Q99715 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.57□□□□□ -0.08
COL12A1Q99715 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.57□□□□□ -0.08
COL12A1Q99715 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.57□□□□□ -0.08
COL12A1Q99715 U1.21-201ENST00000580816 167 ntBASIC14.57□□□□□ -0.08
COL12A1Q99715 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC14.57□□□□□ -0.08
COL12A1Q99715 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.57□□□□□ -0.08
COL12A1Q99715 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.57□□□□□ -0.08
COL12A1Q99715 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.57□□□□□ -0.08
COL12A1Q99715 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 AC006033.1-201ENST00000440505 426 ntBASIC14.57□□□□□ -0.08
COL12A1Q99715 AP001889.1-201ENST00000525414 633 ntBASIC14.57□□□□□ -0.08
COL12A1Q99715 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.57□□□□□ -0.08
COL12A1Q99715 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.57□□□□□ -0.08
COL12A1Q99715 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.57□□□□□ -0.08
COL12A1Q99715 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 AL353732.1-201ENST00000569618 1459 ntBASIC14.57□□□□□ -0.08
COL12A1Q99715 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.57□□□□□ -0.08
COL12A1Q99715 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL12A1Q99715 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.56□□□□□ -0.08
COL12A1Q99715 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC14.56□□□□□ -0.08
COL12A1Q99715 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.56□□□□□ -0.08
COL12A1Q99715 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC14.56□□□□□ -0.08
COL12A1Q99715 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL12A1Q99715 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.56□□□□□ -0.08
COL12A1Q99715 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC14.56□□□□□ -0.08
COL12A1Q99715 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.56□□□□□ -0.08
COL12A1Q99715 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.56□□□□□ -0.08
COL12A1Q99715 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
COL12A1Q99715 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC14.56□□□□□ -0.08
COL12A1Q99715 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC14.56□□□□□ -0.08
COL12A1Q99715 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.56□□□□□ -0.08
COL12A1Q99715 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 NUS1P3-201ENST00000423502 862 ntBASIC14.56□□□□□ -0.08
COL12A1Q99715 RN7SL769P-201ENST00000469386 295 ntBASIC14.56□□□□□ -0.08
COL12A1Q99715 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.56□□□□□ -0.08
COL12A1Q99715 AL133215.2-201ENST00000609242 977 ntBASIC14.56□□□□□ -0.08
COL12A1Q99715 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.56□□□□□ -0.08
COL12A1Q99715 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL12A1Q99715 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL12A1Q99715 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms