Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC099336.1-201ENST00000417053 1171 ntBASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC009113.1-201ENST00000570267 2443 ntBASIC16.48■□□□□ 0.23
VPS13AQ96RL7 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC104457.1-201ENST00000401024 814 ntBASIC16.48■□□□□ 0.23
VPS13AQ96RL7 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 MIR4706-201ENST00000582134 82 ntBASIC16.48■□□□□ 0.23
VPS13AQ96RL7 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.48■□□□□ 0.23
VPS13AQ96RL7 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 LYSMD4-203ENST00000378904 2122 ntBASIC16.47■□□□□ 0.23
VPS13AQ96RL7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 GPAA1P2-201ENST00000417923 928 ntBASIC16.47■□□□□ 0.23
VPS13AQ96RL7 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 AL079307.3-201ENST00000556114 283 ntBASIC16.47■□□□□ 0.23
VPS13AQ96RL7 SRD5A3P1-201ENST00000603021 949 ntBASIC16.47■□□□□ 0.23
VPS13AQ96RL7 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
VPS13AQ96RL7 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 IGHJ2P-201ENST00000454480 60 ntBASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AC133552.6-201ENST00000613406 534 ntBASIC16.46■□□□□ 0.23
VPS13AQ96RL7 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms