Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 AL391256.1-201ENST00000443260 1855 ntBASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 LINC00982-205ENST00000420957 435 ntBASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 ACTG1P4-201ENST00000425123 1122 ntBASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 AL445228.2-201ENST00000605589 952 ntBASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
CLHC1Q8NHS4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 ARMC10P1-201ENST00000313754 855 ntBASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 ATP5G2P1-201ENST00000433580 426 ntBASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 BX005266.1-201ENST00000473402 457 ntBASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 AL591684.3-201ENST00000605187 298 ntBASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLHC1Q8NHS4 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 AC079776.2-201ENST00000641154 1609 ntBASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 AC006449.5-201ENST00000610658 2098 ntBASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLHC1Q8NHS4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms