Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 MIR1247-201ENST00000408206 136 ntBASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 KLF2P4-201ENST00000451959 1225 ntBASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 AC093726.1-201ENST00000608064 963 ntBASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 TEX48-202ENST00000612244 662 ntTSL 3 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 5S_rRNA.22-201ENST00000614916 106 ntBASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 AC004408.2-201ENST00000623613 2777 ntBASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC1BQ8NDV3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 GPAA1P2-201ENST00000417923 928 ntBASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 AC243960.2-201ENST00000600996 747 ntBASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 AL133215.2-201ENST00000609242 977 ntBASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 AL033527.5-201ENST00000641382 801 ntBASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
SMC1BQ8NDV3 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 FAM21FP-201ENST00000426241 1131 ntBASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 AC026471.1-201ENST00000564629 3026 ntBASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SMC1BQ8NDV3 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms