Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC65Q8IXS2 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 REXO1L3P-201ENST00000622202 1288 ntBASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC65Q8IXS2 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 MRPL3P1-201ENST00000400109 1033 ntBASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 AC092910.1-201ENST00000482027 1129 ntBASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 AC093909.1-201ENST00000504731 1122 ntBASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 AL662844.1-201ENST00000546340 181 ntBASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 MIR7706-201ENST00000613747 67 ntBASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 AC084018.2-201ENST00000613093 2607 ntBASIC18.77■□□□□ 0.6
CCDC65Q8IXS2 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC65Q8IXS2 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC65Q8IXS2 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC65Q8IXS2 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC65Q8IXS2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.59
CCDC65Q8IXS2 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC65Q8IXS2 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 AC006277.1-201ENST00000624348 1610 ntBASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 AP001005.1-201ENST00000571755 1248 ntBASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 AL049840.3-201ENST00000602669 611 ntBASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 AC013467.2-201ENST00000605472 835 ntBASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC65Q8IXS2 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC65Q8IXS2 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC65Q8IXS2 AC129492.6-201ENST00000611383 1305 ntBASIC18.75■□□□□ 0.59
CCDC65Q8IXS2 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CCDC65Q8IXS2 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC65Q8IXS2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms