Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 NEK7-201ENST00000367383 586 ntTSL 2 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 DNAJB3-202ENST00000449667 1266 ntBASIC20.04■□□□□ 0.8
CTR9Q6PD62 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 PUS1-205ENST00000535067 838 ntTSL 3 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 MIR4492-201ENST00000581627 80 ntBASIC20.04■□□□□ 0.8
CTR9Q6PD62 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 AC131009.4-201ENST00000624048 1740 ntBASIC20.04■□□□□ 0.8
CTR9Q6PD62 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 AC060834.1-201ENST00000443027 2032 ntBASIC20.03■□□□□ 0.8
CTR9Q6PD62 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 HCG4-201ENST00000418983 998 ntBASIC20.03■□□□□ 0.8
CTR9Q6PD62 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 AC099522.2-201ENST00000607001 744 ntBASIC20.03■□□□□ 0.8
CTR9Q6PD62 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.03■□□□□ 0.8
CTR9Q6PD62 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CTR9Q6PD62 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTR9Q6PD62 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 ACTG1P14-201ENST00000446382 1122 ntBASIC20.02■□□□□ 0.8
CTR9Q6PD62 AC092183.1-201ENST00000469884 875 ntBASIC20.02■□□□□ 0.8
CTR9Q6PD62 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.02■□□□□ 0.8
CTR9Q6PD62 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTR9Q6PD62 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTR9Q6PD62 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.02■□□□□ 0.79
CTR9Q6PD62 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTR9Q6PD62 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC20.02■□□□□ 0.79
CTR9Q6PD62 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
CTR9Q6PD62 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CTR9Q6PD62 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.02■□□□□ 0.79
CTR9Q6PD62 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTR9Q6PD62 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTR9Q6PD62 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTR9Q6PD62 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CTR9Q6PD62 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CTR9Q6PD62 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTR9Q6PD62 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTR9Q6PD62 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.01■□□□□ 0.79
CTR9Q6PD62 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTR9Q6PD62 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTR9Q6PD62 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CTR9Q6PD62 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTR9Q6PD62 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms