Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.12■□□□□ 0.01
H3F3AP84243 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
H3F3AP84243 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
H3F3AP84243 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
H3F3AP84243 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
H3F3AP84243 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 CRYGEP-201ENST00000412192 528 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 IGLL3P-201ENST00000412472 434 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.12■□□□□ 0.01
H3F3AP84243 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.12■□□□□ 0.01
H3F3AP84243 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.12■□□□□ 0.01
H3F3AP84243 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.12■□□□□ 0.01
H3F3AP84243 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.12■□□□□ 0.01
H3F3AP84243 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.12■□□□□ 0.01
H3F3AP84243 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.12■□□□□ 0.01
H3F3AP84243 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.12■□□□□ 0.01
H3F3AP84243 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.12■□□□□ 0.01
H3F3AP84243 MIR4751-201ENST00000578027 74 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 AC091167.2-201ENST00000579581 588 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 MIR4492-201ENST00000581627 80 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 MPDU1-223ENST00000582151 728 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.12■□□□□ 0.01
H3F3AP84243 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
H3F3AP84243 AC013467.2-201ENST00000605472 835 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 ACTL9-202ENST00000612068 1252 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.12■□□□□ 0.01
H3F3AP84243 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.12■□□□□ 0.01
H3F3AP84243 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
H3F3AP84243 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
H3F3AP84243 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 TNRC18P3-201ENST00000441896 2691 ntBASIC15.12■□□□□ 0.01
H3F3AP84243 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.12■□□□□ 0.01
H3F3AP84243 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
H3F3AP84243 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
H3F3AP84243 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
H3F3AP84243 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
H3F3AP84243 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
H3F3AP84243 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 ZNF259P1-201ENST00000407656 1365 ntBASIC15.11■□□□□ 0.01
H3F3AP84243 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
H3F3AP84243 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
H3F3AP84243 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.11■□□□□ 0.01
H3F3AP84243 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
H3F3AP84243 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
H3F3AP84243 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
H3F3AP84243 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.11■□□□□ 0.01
H3F3AP84243 CXCL1P1-201ENST00000502804 216 ntBASIC15.11■□□□□ 0.01
H3F3AP84243 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.11■□□□□ 0.01
H3F3AP84243 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.11■□□□□ 0.01
H3F3AP84243 AC005412.3-201ENST00000580309 715 ntBASIC15.11■□□□□ 0.01
H3F3AP84243 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.11■□□□□ 0.01
H3F3AP84243 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.11■□□□□ 0.01
H3F3AP84243 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.11■□□□□ 0.01
H3F3AP84243 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.11■□□□□ 0.01
H3F3AP84243 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
H3F3AP84243 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms