Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 AC006538.1-201ENST00000567905 1585 ntBASIC16.4■□□□□ 0.22
FOXA1P55317 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA1P55317 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 TERC-201ENST00000602385 541 ntBASIC16.4■□□□□ 0.22
FOXA1P55317 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA1P55317 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA1P55317 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA1P55317 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
FOXA1P55317 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
FOXA1P55317 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA1P55317 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
FOXA1P55317 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA1P55317 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
FOXA1P55317 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.22
FOXA1P55317 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
FOXA1P55317 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
FOXA1P55317 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 ME2P1-201ENST00000426028 1970 ntBASIC16.39■□□□□ 0.21
FOXA1P55317 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXA1P55317 PRYP5-201ENST00000451909 266 ntBASIC16.39■□□□□ 0.21
FOXA1P55317 FOSL1P1-201ENST00000511041 816 ntBASIC16.39■□□□□ 0.21
FOXA1P55317 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.39■□□□□ 0.21
FOXA1P55317 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
FOXA1P55317 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXA1P55317 AL732292.2-201ENST00000609649 430 ntBASIC16.39■□□□□ 0.21
FOXA1P55317 AC093458.2-201ENST00000623150 629 ntBASIC16.39■□□□□ 0.21
FOXA1P55317 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXA1P55317 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
FOXA1P55317 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXA1P55317 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
FOXA1P55317 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXA1P55317 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.39■□□□□ 0.21
FOXA1P55317 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.39■□□□□ 0.21
FOXA1P55317 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.39■□□□□ 0.21
FOXA1P55317 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
FOXA1P55317 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.39■□□□□ 0.21
FOXA1P55317 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA1P55317 OR6D1P-203ENST00000641209 4860 ntBASIC16.39■□□□□ 0.21
FOXA1P55317 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXA1P55317 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.38■□□□□ 0.21
FOXA1P55317 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
FOXA1P55317 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
FOXA1P55317 AL513523.2-202ENST00000427283 2040 ntBASIC16.38■□□□□ 0.21
FOXA1P55317 AC006277.1-201ENST00000624348 1610 ntBASIC16.38■□□□□ 0.21
FOXA1P55317 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
FOXA1P55317 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA1P55317 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
FOXA1P55317 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA1P55317 KRT16P4-201ENST00000453883 522 ntBASIC16.38■□□□□ 0.21
FOXA1P55317 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.38■□□□□ 0.21
FOXA1P55317 AC106795.1-205ENST00000512851 1056 ntBASIC16.38■□□□□ 0.21
FOXA1P55317 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.38■□□□□ 0.21
FOXA1P55317 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.38■□□□□ 0.21
FOXA1P55317 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms