Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
CDH4P55283 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 AC002056.1-201ENST00000395613 760 ntBASIC17.24■□□□□ 0.35
CDH4P55283 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.24■□□□□ 0.35
CDH4P55283 HTR5BP-201ENST00000430851 1154 ntBASIC17.24■□□□□ 0.35
CDH4P55283 FAM58CP-201ENST00000435741 640 ntBASIC17.24■□□□□ 0.35
CDH4P55283 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH4P55283 ALG1L5P-201ENST00000482043 771 ntBASIC17.24■□□□□ 0.35
CDH4P55283 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
CDH4P55283 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.24■□□□□ 0.35
CDH4P55283 MIR3909-201ENST00000579518 119 ntBASIC17.24■□□□□ 0.35
CDH4P55283 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH4P55283 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
CDH4P55283 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CDH4P55283 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH4P55283 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH4P55283 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH4P55283 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CDH4P55283 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CDH4P55283 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH4P55283 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH4P55283 AL391256.1-201ENST00000443260 1855 ntBASIC17.23■□□□□ 0.35
CDH4P55283 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH4P55283 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH4P55283 RNU1-129P-201ENST00000384064 167 ntBASIC17.23■□□□□ 0.35
CDH4P55283 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 MIR1233-2-201ENST00000408138 82 ntBASIC17.23■□□□□ 0.35
CDH4P55283 MIR1233-1-201ENST00000408722 82 ntBASIC17.23■□□□□ 0.35
CDH4P55283 ACTG1P14-201ENST00000446382 1122 ntBASIC17.23■□□□□ 0.35
CDH4P55283 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH4P55283 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
CDH4P55283 U1.21-201ENST00000580816 167 ntBASIC17.23■□□□□ 0.35
CDH4P55283 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 AL078644.1-201ENST00000609881 752 ntBASIC17.23■□□□□ 0.35
CDH4P55283 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CDH4P55283 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
CDH4P55283 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH4P55283 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CDH4P55283 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CDH4P55283 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH4P55283 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 AL645728.1-201ENST00000366221 2101 ntBASIC17.22■□□□□ 0.35
CDH4P55283 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.22■□□□□ 0.35
CDH4P55283 YBX1P5-201ENST00000509441 847 ntBASIC17.22■□□□□ 0.35
CDH4P55283 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 AC109635.5-201ENST00000533593 962 ntBASIC17.22■□□□□ 0.35
CDH4P55283 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.22■□□□□ 0.35
CDH4P55283 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.22■□□□□ 0.35
CDH4P55283 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 AL009183.1-201ENST00000603760 355 ntBASIC17.22■□□□□ 0.35
CDH4P55283 AL031055.1-201ENST00000606362 631 ntBASIC17.22■□□□□ 0.35
CDH4P55283 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CDH4P55283 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH4P55283 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms