Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
HOXA1P49639 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXA1P49639 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
HOXA1P49639 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 AC112698.1-201ENST00000510299 916 ntBASIC14.11□□□□□ -0.15
HOXA1P49639 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.11□□□□□ -0.15
HOXA1P49639 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
HOXA1P49639 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
HOXA1P49639 AC004263.2-201ENST00000617183 678 ntBASIC14.11□□□□□ -0.15
HOXA1P49639 AC141257.4-201ENST00000634557 245 ntBASIC14.11□□□□□ -0.15
HOXA1P49639 AC136944.6-201ENST00000634818 245 ntBASIC14.11□□□□□ -0.15
HOXA1P49639 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
HOXA1P49639 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXA1P49639 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 AC006058.4-201ENST00000624016 1670 ntBASIC14.1□□□□□ -0.15
HOXA1P49639 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA1P49639 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA1P49639 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA1P49639 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXA1P49639 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 TSPY15P-201ENST00000457163 923 ntBASIC14.1□□□□□ -0.15
HOXA1P49639 RASA4DP-201ENST00000460726 1199 ntBASIC14.1□□□□□ -0.15
HOXA1P49639 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 TMA16-209ENST00000513272 803 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA1P49639 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 AC140113.3-201ENST00000605663 199 ntBASIC14.1□□□□□ -0.15
HOXA1P49639 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 AL023973.1-201ENST00000624619 620 ntBASIC14.1□□□□□ -0.15
HOXA1P49639 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA1P49639 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXA1P49639 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXA1P49639 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXA1P49639 KRT18P22-201ENST00000402024 1347 ntBASIC14.1□□□□□ -0.15
HOXA1P49639 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms