Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.71■□□□□ 0.58
HTTP42858 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.71■□□□□ 0.58
HTTP42858 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
HTTP42858 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.7■□□□□ 0.58
HTTP42858 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.7■□□□□ 0.58
HTTP42858 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.7■□□□□ 0.58
HTTP42858 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.7■□□□□ 0.58
HTTP42858 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.7■□□□□ 0.58
HTTP42858 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.7■□□□□ 0.58
HTTP42858 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.7■□□□□ 0.58
HTTP42858 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.7■□□□□ 0.58
HTTP42858 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.7■□□□□ 0.58
HTTP42858 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
HTTP42858 RN7SL618P-201ENST00000477850 296 ntBASIC18.7■□□□□ 0.58
HTTP42858 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.7■□□□□ 0.58
HTTP42858 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.7■□□□□ 0.58
HTTP42858 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HTTP42858 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.7■□□□□ 0.58
HTTP42858 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 AC098818.2-201ENST00000564925 2320 ntBASIC18.7■□□□□ 0.58
HTTP42858 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HTTP42858 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.7■□□□□ 0.58
HTTP42858 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.69■□□□□ 0.58
HTTP42858 MIR1247-201ENST00000408206 136 ntBASIC18.69■□□□□ 0.58
HTTP42858 FXNP2-201ENST00000411625 547 ntBASIC18.69■□□□□ 0.58
HTTP42858 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HTTP42858 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC18.69■□□□□ 0.58
HTTP42858 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.69■□□□□ 0.58
HTTP42858 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HTTP42858 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HTTP42858 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.69■□□□□ 0.58
HTTP42858 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.69■□□□□ 0.58
HTTP42858 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HTTP42858 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
HTTP42858 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.69■□□□□ 0.58
HTTP42858 MIR3615-201ENST00000581999 87 ntBASIC18.69■□□□□ 0.58
HTTP42858 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HTTP42858 KRT18P55-202ENST00000578578 1546 ntBASIC18.69■□□□□ 0.58
HTTP42858 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC18.69■□□□□ 0.58
HTTP42858 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
HTTP42858 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.69■□□□□ 0.58
HTTP42858 AC103810.3-201ENST00000583567 96 ntBASIC18.69■□□□□ 0.58
HTTP42858 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HTTP42858 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HTTP42858 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
HTTP42858 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.68■□□□□ 0.58
HTTP42858 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.68■□□□□ 0.58
HTTP42858 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.68■□□□□ 0.58
HTTP42858 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.68■□□□□ 0.58
HTTP42858 AC123567.1-201ENST00000548294 1261 ntBASIC18.68■□□□□ 0.58
HTTP42858 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HTTP42858 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HTTP42858 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.68■□□□□ 0.58
HTTP42858 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HTTP42858 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.68■□□□□ 0.58
HTTP42858 CTBP2P5-201ENST00000454986 1264 ntBASIC18.68■□□□□ 0.58
HTTP42858 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.68■□□□□ 0.58
HTTP42858 TPRX2P-201ENST00000535362 881 ntBASIC18.68■□□□□ 0.58
HTTP42858 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC18.68■□□□□ 0.58
HTTP42858 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.68■□□□□ 0.58
HTTP42858 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.68■□□□□ 0.58
HTTP42858 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
HTTP42858 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HTTP42858 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HTTP42858 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
HTTP42858 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
HTTP42858 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HTTP42858 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.67■□□□□ 0.58
HTTP42858 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.67■□□□□ 0.58
HTTP42858 AC092337.1-201ENST00000568699 1129 ntBASIC18.67■□□□□ 0.58
HTTP42858 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.67■□□□□ 0.58
HTTP42858 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.67■□□□□ 0.58
HTTP42858 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms