Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFC3P40938 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFC3P40938 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFC3P40938 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFC3P40938 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFC3P40938 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RFC3P40938 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.51■□□□□ 0.07
RFC3P40938 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFC3P40938 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
RFC3P40938 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.5■□□□□ 0.07
RFC3P40938 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.5■□□□□ 0.07
RFC3P40938 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.5■□□□□ 0.07
RFC3P40938 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
RFC3P40938 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.5■□□□□ 0.07
RFC3P40938 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.5■□□□□ 0.07
RFC3P40938 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.5■□□□□ 0.07
RFC3P40938 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.5■□□□□ 0.07
RFC3P40938 METTL21AP1-201ENST00000438852 635 ntBASIC15.5■□□□□ 0.07
RFC3P40938 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.5■□□□□ 0.07
RFC3P40938 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.5■□□□□ 0.07
RFC3P40938 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.5■□□□□ 0.07
RFC3P40938 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.5■□□□□ 0.07
RFC3P40938 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.5■□□□□ 0.07
RFC3P40938 AC068137.2-201ENST00000605408 478 ntBASIC15.5■□□□□ 0.07
RFC3P40938 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.5■□□□□ 0.07
RFC3P40938 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.5■□□□□ 0.07
RFC3P40938 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
RFC3P40938 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
RFC3P40938 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFC3P40938 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 GNAS-203ENST00000306120 1878 ntBASIC15.49■□□□□ 0.07
RFC3P40938 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.49■□□□□ 0.07
RFC3P40938 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.49■□□□□ 0.07
RFC3P40938 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.49■□□□□ 0.07
RFC3P40938 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RFC3P40938 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.49■□□□□ 0.07
RFC3P40938 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.49■□□□□ 0.07
RFC3P40938 CNN2P11-201ENST00000429351 262 ntBASIC15.49■□□□□ 0.07
RFC3P40938 MKNK2P1-201ENST00000437526 628 ntBASIC15.49■□□□□ 0.07
RFC3P40938 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.49■□□□□ 0.07
RFC3P40938 AC107918.2-201ENST00000530817 355 ntBASIC15.49■□□□□ 0.07
RFC3P40938 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
RFC3P40938 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.49■□□□□ 0.07
RFC3P40938 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.49■□□□□ 0.07
RFC3P40938 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.49■□□□□ 0.07
RFC3P40938 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFC3P40938 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
RFC3P40938 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RFC3P40938 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.49■□□□□ 0.07
RFC3P40938 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFC3P40938 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFC3P40938 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFC3P40938 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFC3P40938 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFC3P40938 KRT18P28-201ENST00000453838 1332 ntBASIC15.48■□□□□ 0.07
RFC3P40938 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFC3P40938 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFC3P40938 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFC3P40938 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.48■□□□□ 0.07
RFC3P40938 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.48■□□□□ 0.07
RFC3P40938 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms