Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.37□□□□□ -0.11
USF1P22415 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 AC004835.2-201ENST00000603762 682 ntBASIC14.37□□□□□ -0.11
USF1P22415 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.37□□□□□ -0.11
USF1P22415 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC14.37□□□□□ -0.11
USF1P22415 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.37□□□□□ -0.11
USF1P22415 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
USF1P22415 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USF1P22415 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.36□□□□□ -0.11
USF1P22415 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
USF1P22415 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.36□□□□□ -0.11
USF1P22415 TSEN15P1-201ENST00000423257 515 ntBASIC14.36□□□□□ -0.11
USF1P22415 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.36□□□□□ -0.11
USF1P22415 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.36□□□□□ -0.11
USF1P22415 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
USF1P22415 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.36□□□□□ -0.11
USF1P22415 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.36□□□□□ -0.11
USF1P22415 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.36□□□□□ -0.11
USF1P22415 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.36□□□□□ -0.11
USF1P22415 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.36□□□□□ -0.11
USF1P22415 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.36□□□□□ -0.11
USF1P22415 AC068137.2-201ENST00000605408 478 ntBASIC14.36□□□□□ -0.11
USF1P22415 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
USF1P22415 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
USF1P22415 AL590787.1-201ENST00000568856 1315 ntBASIC14.36□□□□□ -0.11
USF1P22415 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 AC133963.1-201ENST00000504166 1679 ntBASIC14.36□□□□□ -0.11
USF1P22415 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC14.36□□□□□ -0.11
USF1P22415 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USF1P22415 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.35□□□□□ -0.11
USF1P22415 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.35□□□□□ -0.11
USF1P22415 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.35□□□□□ -0.11
USF1P22415 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 AL355312.1-201ENST00000407115 2176 ntBASIC14.35□□□□□ -0.11
USF1P22415 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.35□□□□□ -0.11
USF1P22415 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.35□□□□□ -0.11
USF1P22415 AC004449.1-201ENST00000564240 433 ntBASIC14.35□□□□□ -0.11
USF1P22415 AC011467.4-201ENST00000594891 528 ntBASIC14.35□□□□□ -0.11
USF1P22415 AC027612.4-201ENST00000605371 583 ntBASIC14.35□□□□□ -0.11
USF1P22415 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.35□□□□□ -0.11
USF1P22415 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.35□□□□□ -0.11
USF1P22415 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USF1P22415 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.34□□□□□ -0.11
USF1P22415 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
USF1P22415 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC14.34□□□□□ -0.11
USF1P22415 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
USF1P22415 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
USF1P22415 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 ENSA-206ENST00000361631 725 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms