Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGA1P17096 MIR3197-201ENST00000582241 73 ntBASIC17.43■□□□□ 0.38
HMGA1P17096 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 AC011467.4-201ENST00000594891 528 ntBASIC17.43■□□□□ 0.38
HMGA1P17096 AC073389.1-201ENST00000595595 795 ntBASIC17.43■□□□□ 0.38
HMGA1P17096 AL096865.1-201ENST00000606796 927 ntBASIC17.43■□□□□ 0.38
HMGA1P17096 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGA1P17096 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGA1P17096 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HMGA1P17096 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HMGA1P17096 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGA1P17096 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGA1P17096 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGA1P17096 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 FAM8A3P-201ENST00000427218 844 ntBASIC17.42■□□□□ 0.38
HMGA1P17096 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGA1P17096 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGA1P17096 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGA1P17096 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGA1P17096 KRT18P34-201ENST00000488218 1270 ntBASIC17.42■□□□□ 0.38
HMGA1P17096 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGA1P17096 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGA1P17096 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGA1P17096 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
HMGA1P17096 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HMGA1P17096 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGA1P17096 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGA1P17096 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HMGA1P17096 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 KRT8P39-201ENST00000396270 1433 ntBASIC17.41■□□□□ 0.38
HMGA1P17096 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
HMGA1P17096 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGA1P17096 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGA1P17096 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 KLF2P3-201ENST00000451977 1087 ntBASIC17.41■□□□□ 0.38
HMGA1P17096 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGA1P17096 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGA1P17096 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.41■□□□□ 0.38
HMGA1P17096 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGA1P17096 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGA1P17096 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGA1P17096 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGA1P17096 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGA1P17096 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGA1P17096 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGA1P17096 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HMGA1P17096 FOXO1B-201ENST00000504678 1527 ntBASIC17.41■□□□□ 0.38
HMGA1P17096 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGA1P17096 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.4■□□□□ 0.38
HMGA1P17096 AL645608.8-201ENST00000606034 2086 ntBASIC17.4■□□□□ 0.38
HMGA1P17096 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HMGA1P17096 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGA1P17096 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGA1P17096 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGA1P17096 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGA1P17096 AC055876.3-201ENST00000431496 288 ntBASIC17.4■□□□□ 0.38
HMGA1P17096 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGA1P17096 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.4■□□□□ 0.38
HMGA1P17096 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HMGA1P17096 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms