Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
GGPS1O95749 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.93■□□□□ 0.62
GGPS1O95749 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.93■□□□□ 0.62
GGPS1O95749 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.93■□□□□ 0.62
GGPS1O95749 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.93■□□□□ 0.62
GGPS1O95749 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.93■□□□□ 0.62
GGPS1O95749 AC069335.1-201ENST00000489972 472 ntBASIC18.93■□□□□ 0.62
GGPS1O95749 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.93■□□□□ 0.62
GGPS1O95749 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
GGPS1O95749 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.93■□□□□ 0.62
GGPS1O95749 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.93■□□□□ 0.62
GGPS1O95749 AC131009.4-201ENST00000624048 1740 ntBASIC18.93■□□□□ 0.62
GGPS1O95749 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.93■□□□□ 0.62
GGPS1O95749 AC139713.2-201ENST00000641328 2723 ntBASIC18.93■□□□□ 0.62
GGPS1O95749 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.93■□□□□ 0.62
GGPS1O95749 AL021920.2-201ENST00000624828 1351 ntBASIC18.93■□□□□ 0.62
GGPS1O95749 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.93■□□□□ 0.62
GGPS1O95749 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.92■□□□□ 0.62
GGPS1O95749 KRT8P49-201ENST00000604166 1432 ntBASIC18.92■□□□□ 0.62
GGPS1O95749 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 SPCS2P4-201ENST00000436160 681 ntBASIC18.92■□□□□ 0.62
GGPS1O95749 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
GGPS1O95749 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.92■□□□□ 0.62
GGPS1O95749 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
GGPS1O95749 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.92■□□□□ 0.62
GGPS1O95749 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 AC093512.1-201ENST00000617969 520 ntBASIC18.92■□□□□ 0.62
GGPS1O95749 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.92■□□□□ 0.62
GGPS1O95749 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.92■□□□□ 0.62
GGPS1O95749 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
GGPS1O95749 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
GGPS1O95749 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
GGPS1O95749 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
GGPS1O95749 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.91■□□□□ 0.62
GGPS1O95749 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
GGPS1O95749 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.91■□□□□ 0.62
GGPS1O95749 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
GGPS1O95749 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.91■□□□□ 0.62
GGPS1O95749 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.91■□□□□ 0.62
GGPS1O95749 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.91■□□□□ 0.62
GGPS1O95749 KRT18P32-201ENST00000424695 1287 ntBASIC18.91■□□□□ 0.62
GGPS1O95749 FAM58DP-201ENST00000428076 619 ntBASIC18.91■□□□□ 0.62
GGPS1O95749 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.91■□□□□ 0.62
GGPS1O95749 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.91■□□□□ 0.62
GGPS1O95749 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
GGPS1O95749 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.91■□□□□ 0.62
GGPS1O95749 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 AP001350.2-201ENST00000625104 1094 ntBASIC18.91■□□□□ 0.62
GGPS1O95749 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
GGPS1O95749 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
GGPS1O95749 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
GGPS1O95749 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.91■□□□□ 0.62
GGPS1O95749 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
GGPS1O95749 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
GGPS1O95749 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.9■□□□□ 0.62
GGPS1O95749 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.9■□□□□ 0.62
GGPS1O95749 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
GGPS1O95749 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
GGPS1O95749 OR6D1P-202ENST00000641007 5290 ntBASIC18.9■□□□□ 0.62
GGPS1O95749 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
GGPS1O95749 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
GGPS1O95749 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
GGPS1O95749 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms