Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.22■□□□□ 0.35
RIPK2O43353 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
RIPK2O43353 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RIPK2O43353 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RIPK2O43353 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.21■□□□□ 0.35
RIPK2O43353 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 MST1L-201ENST00000442552 2185 ntBASIC17.21■□□□□ 0.35
RIPK2O43353 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
RIPK2O43353 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.21■□□□□ 0.35
RIPK2O43353 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 NUS1P1-201ENST00000446295 882 ntBASIC17.21■□□□□ 0.35
RIPK2O43353 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.21■□□□□ 0.35
RIPK2O43353 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.21■□□□□ 0.35
RIPK2O43353 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.21■□□□□ 0.35
RIPK2O43353 AC011840.4-201ENST00000578471 627 ntBASIC17.21■□□□□ 0.35
RIPK2O43353 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.21■□□□□ 0.35
RIPK2O43353 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
RIPK2O43353 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RIPK2O43353 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.21■□□□□ 0.35
RIPK2O43353 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RIPK2O43353 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
RIPK2O43353 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RIPK2O43353 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.21■□□□□ 0.34
RIPK2O43353 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 ACTG1P4-201ENST00000425123 1122 ntBASIC17.2■□□□□ 0.34
RIPK2O43353 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 AC009533.2-201ENST00000543664 586 ntBASIC17.2■□□□□ 0.34
RIPK2O43353 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.2■□□□□ 0.34
RIPK2O43353 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.2■□□□□ 0.34
RIPK2O43353 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.2■□□□□ 0.34
RIPK2O43353 AL139011.1-202ENST00000642063 584 ntBASIC17.2■□□□□ 0.34
RIPK2O43353 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.2■□□□□ 0.34
RIPK2O43353 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.2■□□□□ 0.34
RIPK2O43353 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.2■□□□□ 0.34
RIPK2O43353 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RIPK2O43353 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.2■□□□□ 0.34
RIPK2O43353 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RIPK2O43353 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.19■□□□□ 0.34
RIPK2O43353 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RIPK2O43353 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
RIPK2O43353 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.19■□□□□ 0.34
RIPK2O43353 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RIPK2O43353 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RIPK2O43353 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.19■□□□□ 0.34
RIPK2O43353 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.19■□□□□ 0.34
RIPK2O43353 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.19■□□□□ 0.34
RIPK2O43353 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RIPK2O43353 AC010491.1-201ENST00000563101 2797 ntBASIC17.19■□□□□ 0.34
RIPK2O43353 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RIPK2O43353 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RIPK2O43353 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RIPK2O43353 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms