Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 AL353732.1-201ENST00000569618 1459 ntBASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX9Q9Y5X1 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 GPX1P2-201ENST00000429271 606 ntBASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 MIR4515-201ENST00000584082 81 ntBASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX9Q9Y5X1 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 SLC22A20-204ENST00000530038 1673 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 TUBB8P12-201ENST00000308911 1335 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 TUBB7P-202ENST00000428444 1305 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 TUBB8P7-204ENST00000567960 1332 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 RPSAP43-201ENST00000402237 625 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 UPF3AP3-201ENST00000420996 769 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 MIR3687-2-201ENST00000577708 61 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 MPDU1-223ENST00000582151 728 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 MIR3687-1-201ENST00000614492 61 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 AL645728.2-201ENST00000641974 660 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 OR6D1P-203ENST00000641209 4860 ntBASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX9Q9Y5X1 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SNX9Q9Y5X1 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SNX9Q9Y5X1 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX9Q9Y5X1 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX9Q9Y5X1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX9Q9Y5X1 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX9Q9Y5X1 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.08■□□□□ 0.49
SNX9Q9Y5X1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNX9Q9Y5X1 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNX9Q9Y5X1 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.08■□□□□ 0.48
SNX9Q9Y5X1 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.08■□□□□ 0.48
SNX9Q9Y5X1 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.08■□□□□ 0.48
SNX9Q9Y5X1 AC112482.1-201ENST00000492080 688 ntBASIC18.08■□□□□ 0.48
SNX9Q9Y5X1 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.08■□□□□ 0.48
SNX9Q9Y5X1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms