Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 HLA-A-202ENST00000376806 1854 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AL356309.3-201ENST00000624132 1934 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 MIR3652-201ENST00000579335 131 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 TERC-201ENST00000602385 541 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AL732292.2-201ENST00000609649 430 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AL121772.3-201ENST00000610840 674 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AL589182.2-201ENST00000619332 1049 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 AL391256.1-201ENST00000443260 1855 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 FLJ16779-201ENST00000612722 7638 ntBASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HIF3AQ9Y2N7 UBALD1-205ENST00000590891 2641 ntBASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 AC007326.2-201ENST00000624224 7579 ntBASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 KRT8P49-201ENST00000604166 1432 ntBASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 AC064862.7-201ENST00000604520 867 ntBASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
HIF3AQ9Y2N7 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms