Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AC025678.2-201ENST00000562061 970 ntBASIC19.03■□□□□ 0.64
COL20A1Q9P218 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.03■□□□□ 0.64
COL20A1Q9P218 AC013467.2-201ENST00000605472 835 ntBASIC19.03■□□□□ 0.64
COL20A1Q9P218 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.03■□□□□ 0.64
COL20A1Q9P218 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.03■□□□□ 0.64
COL20A1Q9P218 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL20A1Q9P218 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL20A1Q9P218 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL20A1Q9P218 UXT-AS1-201ENST00000590504 1525 ntBASIC19.03■□□□□ 0.64
COL20A1Q9P218 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL20A1Q9P218 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL20A1Q9P218 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL20A1Q9P218 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL20A1Q9P218 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL20A1Q9P218 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.03■□□□□ 0.64
COL20A1Q9P218 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 RBPMS2P1-201ENST00000437762 623 ntBASIC19.02■□□□□ 0.64
COL20A1Q9P218 SPDYE14P-201ENST00000442619 822 ntBASIC19.02■□□□□ 0.64
COL20A1Q9P218 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 IGHV3-62-201ENST00000520057 340 ntBASIC19.02■□□□□ 0.64
COL20A1Q9P218 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 KRT8P23-201ENST00000560090 1207 ntBASIC19.02■□□□□ 0.64
COL20A1Q9P218 AP000842.3-202ENST00000569238 1080 ntBASIC19.02■□□□□ 0.64
COL20A1Q9P218 AC027307.2-201ENST00000591252 911 ntBASIC19.02■□□□□ 0.64
COL20A1Q9P218 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
COL20A1Q9P218 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL20A1Q9P218 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL20A1Q9P218 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.02■□□□□ 0.63
COL20A1Q9P218 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL20A1Q9P218 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL20A1Q9P218 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 MIR346-201ENST00000362234 95 ntBASIC19.01■□□□□ 0.63
COL20A1Q9P218 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.01■□□□□ 0.63
COL20A1Q9P218 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.01■□□□□ 0.63
COL20A1Q9P218 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 AC026150.2-201ENST00000564693 1156 ntBASIC19.01■□□□□ 0.63
COL20A1Q9P218 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.01■□□□□ 0.63
COL20A1Q9P218 AL390955.2-201ENST00000603032 514 ntBASIC19.01■□□□□ 0.63
COL20A1Q9P218 AC008267.7-201ENST00000624570 1194 ntBASIC19.01■□□□□ 0.63
COL20A1Q9P218 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 AL645728.1-201ENST00000366221 2101 ntBASIC19.01■□□□□ 0.63
COL20A1Q9P218 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL20A1Q9P218 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.01■□□□□ 0.63
COL20A1Q9P218 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL20A1Q9P218 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19■□□□□ 0.63
COL20A1Q9P218 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL20A1Q9P218 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19■□□□□ 0.63
COL20A1Q9P218 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL20A1Q9P218 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19■□□□□ 0.63
COL20A1Q9P218 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms