Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 IMPDH1P4-201ENST00000445028 1534 ntBASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 AL512384.1-201ENST00000406683 331 ntBASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 AC112492.5-201ENST00000421897 457 ntBASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 RPS2P32-201ENST00000439199 892 ntBASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 AL589987.1-201ENST00000453380 819 ntBASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 LINC02012-201ENST00000608206 1725 ntBASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
SHANK3Q9BYB0 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC098850.1-201ENST00000419919 790 ntBASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 5S_rRNA.22-201ENST00000614916 106 ntBASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 NOC2LP1-202ENST00000452600 2235 ntBASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 RPS19-201ENST00000221975 500 ntTSL 3 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 DPM2-202ENST00000373110 738 ntTSL 2 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC093004.1-201ENST00000508850 424 ntBASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC023310.3-201ENST00000557027 670 ntBASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC100756.1-201ENST00000562736 682 ntBASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC138749.3-201ENST00000567691 622 ntBASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 NAA38-207ENST00000576861 556 ntTSL 3 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 AC116165.1-201ENST00000611806 668 ntBASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHANK3Q9BYB0 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 PC-204ENST00000524491 1714 ntTSL 2 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 FTH1-202ENST00000526640 786 ntTSL 2 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 APOC4-201ENST00000591600 348 ntTSL 3 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC21.54■■□□□ 1.04
SHANK3Q9BYB0 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms