Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 KRT8P49-201ENST00000604166 1432 ntBASIC16.82■□□□□ 0.28
VPS35Q96QK1 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 FAM185BP-201ENST00000443595 716 ntBASIC16.82■□□□□ 0.28
VPS35Q96QK1 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 CXCL1P1-201ENST00000502804 216 ntBASIC16.82■□□□□ 0.28
VPS35Q96QK1 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 AL671883.3-201ENST00000603274 991 ntBASIC16.82■□□□□ 0.28
VPS35Q96QK1 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 AC008894.3-201ENST00000624324 3103 ntBASIC16.82■□□□□ 0.28
VPS35Q96QK1 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 AC007967.2-201ENST00000432613 625 ntBASIC16.81■□□□□ 0.28
VPS35Q96QK1 KRT18P3-201ENST00000451602 1288 ntBASIC16.81■□□□□ 0.28
VPS35Q96QK1 RNA5SP416-201ENST00000516838 111 ntBASIC16.81■□□□□ 0.28
VPS35Q96QK1 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 AC096734.2-201ENST00000562054 433 ntBASIC16.81■□□□□ 0.28
VPS35Q96QK1 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS35Q96QK1 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS35Q96QK1 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 AC124067.4-201ENST00000519691 2379 ntBASIC16.8■□□□□ 0.28
VPS35Q96QK1 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 RHOQP3-201ENST00000437982 621 ntBASIC16.8■□□□□ 0.28
VPS35Q96QK1 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 AC005412.3-201ENST00000580309 715 ntBASIC16.8■□□□□ 0.28
VPS35Q96QK1 ACTL9-202ENST00000612068 1252 ntBASIC16.8■□□□□ 0.28
VPS35Q96QK1 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VPS35Q96QK1 AC060834.1-201ENST00000443027 2032 ntBASIC16.8■□□□□ 0.28
VPS35Q96QK1 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 AL391005.1-201ENST00000623953 2435 ntBASIC16.8■□□□□ 0.28
VPS35Q96QK1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS35Q96QK1 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms