Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 ACTG1P4-201ENST00000425123 1122 ntBASIC18.32■□□□□ 0.52
CCDC42Q96M95 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 SIGLEC30P-201ENST00000455569 941 ntBASIC18.32■□□□□ 0.52
CCDC42Q96M95 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 PMPCAP1-201ENST00000508114 1576 ntBASIC18.32■□□□□ 0.52
CCDC42Q96M95 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC42Q96M95 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC42Q96M95 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC42Q96M95 AL021920.2-201ENST00000624828 1351 ntBASIC18.3■□□□□ 0.52
CCDC42Q96M95 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 INTS4P1-201ENST00000438455 1935 ntBASIC18.3■□□□□ 0.52
CCDC42Q96M95 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 AL020989.1-201ENST00000422979 469 ntBASIC18.3■□□□□ 0.52
CCDC42Q96M95 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC42Q96M95 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC42Q96M95 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms