Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HPS3Q969F9 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HPS3Q969F9 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HPS3Q969F9 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
HPS3Q969F9 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HPS3Q969F9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HPS3Q969F9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HPS3Q969F9 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.76■□□□□ 0.59
HPS3Q969F9 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.76■□□□□ 0.59
HPS3Q969F9 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HPS3Q969F9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.76■□□□□ 0.59
HPS3Q969F9 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.76■□□□□ 0.59
HPS3Q969F9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.76■□□□□ 0.59
HPS3Q969F9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
HPS3Q969F9 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.76■□□□□ 0.59
HPS3Q969F9 AL031284.1-201ENST00000419297 478 ntBASIC18.76■□□□□ 0.59
HPS3Q969F9 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
HPS3Q969F9 AC092910.1-201ENST00000482027 1129 ntBASIC18.76■□□□□ 0.59
HPS3Q969F9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.76■□□□□ 0.59
HPS3Q969F9 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.76■□□□□ 0.59
HPS3Q969F9 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.76■□□□□ 0.59
HPS3Q969F9 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HPS3Q969F9 AC117500.6-201ENST00000624871 588 ntBASIC18.76■□□□□ 0.59
HPS3Q969F9 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.76■□□□□ 0.59
HPS3Q969F9 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.76■□□□□ 0.59
HPS3Q969F9 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.76■□□□□ 0.59
HPS3Q969F9 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HPS3Q969F9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HPS3Q969F9 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.75■□□□□ 0.59
HPS3Q969F9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.75■□□□□ 0.59
HPS3Q969F9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.75■□□□□ 0.59
HPS3Q969F9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 AL773604.1-201ENST00000617417 272 ntBASIC18.75■□□□□ 0.59
HPS3Q969F9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 AL021920.2-201ENST00000624828 1351 ntBASIC18.75■□□□□ 0.59
HPS3Q969F9 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
HPS3Q969F9 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
HPS3Q969F9 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HPS3Q969F9 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
HPS3Q969F9 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.74■□□□□ 0.59
HPS3Q969F9 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.74■□□□□ 0.59
HPS3Q969F9 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.74■□□□□ 0.59
HPS3Q969F9 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
HPS3Q969F9 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.74■□□□□ 0.59
HPS3Q969F9 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.74■□□□□ 0.59
HPS3Q969F9 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.74■□□□□ 0.59
HPS3Q969F9 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HPS3Q969F9 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.74■□□□□ 0.59
HPS3Q969F9 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms