Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 BEX3-201ENST00000361298 921 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 FHOD1-201ENST00000258201 3990 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CD82-202ENST00000342935 967 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 LINC00982-205ENST00000420957 435 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC023141.5-201ENST00000458585 616 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC092364.2-202ENST00000597012 1073 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC008735.5-201ENST00000623544 497 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC025580.3-201ENST00000617932 1424 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AC003669.1-201ENST00000334569 611 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 RNA5SP416-201ENST00000516838 111 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HLA-J-202ENST00000469281 1241 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AC002347.1-201ENST00000569543 541 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PC-214ENST00000628663 1470 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PGM5P2-202ENST00000637225 1043 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 BCAR1-209ENST00000546196 1340 ntBASIC5.26□□□□□ -1.57
SYNE1Q8NF91 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC5.26□□□□□ -1.57
SYNE1Q8NF91 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms