Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 BTNL10-201ENST00000595971 695 ntBASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SMC1BQ8NDV3 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AC006538.1-201ENST00000567905 1585 ntBASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AC114501.2-201ENST00000439631 535 ntBASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 CTBP2P5-201ENST00000454986 1264 ntBASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 PFN1P12-201ENST00000455938 534 ntBASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 RNA5SP412-201ENST00000516234 123 ntBASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 AC106872.11-201ENST00000605838 421 ntBASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.91■□□□□ 0.78
SMC1BQ8NDV3 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 RAB35-202ENST00000534951 939 ntTSL 2 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 AC044860.1-202ENST00000559481 777 ntBASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 AC105021.1-202ENST00000570572 669 ntBASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 PIGL-212ENST00000581006 554 ntTSL 4 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 SRD5A3P1-201ENST00000603021 949 ntBASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 WFDC1-204ENST00000613603 549 ntBASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 AC093525.8-201ENST00000624099 1342 ntBASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC1BQ8NDV3 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms