Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CTR9Q6PD62 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 AC012569.1-201ENST00000591191 1524 ntBASIC20.07■□□□□ 0.8
CTR9Q6PD62 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 RPS8P6-201ENST00000426177 609 ntBASIC20.07■□□□□ 0.8
CTR9Q6PD62 AC140658.5-201ENST00000438532 169 ntBASIC20.07■□□□□ 0.8
CTR9Q6PD62 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 MPDU1-223ENST00000582151 728 ntBASIC20.07■□□□□ 0.8
CTR9Q6PD62 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 AL021920.2-201ENST00000624828 1351 ntBASIC20.07■□□□□ 0.8
CTR9Q6PD62 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTR9Q6PD62 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CTR9Q6PD62 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 CEND1P1-201ENST00000451006 455 ntBASIC20.06■□□□□ 0.8
CTR9Q6PD62 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 AC091167.2-201ENST00000579581 588 ntBASIC20.06■□□□□ 0.8
CTR9Q6PD62 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 CITED2-204ENST00000618718 901 ntTSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CTR9Q6PD62 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTR9Q6PD62 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 AP006288.1-201ENST00000446065 395 ntBASIC20.05■□□□□ 0.8
CTR9Q6PD62 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 AP001160.2-201ENST00000596071 487 ntBASIC20.05■□□□□ 0.8
CTR9Q6PD62 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CTR9Q6PD62 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTR9Q6PD62 PKD1P1-201ENST00000458669 6805 ntBASIC20.05■□□□□ 0.8
CTR9Q6PD62 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTR9Q6PD62 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.04■□□□□ 0.8
CTR9Q6PD62 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CTR9Q6PD62 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms