Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC122714.2-201ENST00000502787 707 ntBASIC16.31■□□□□ 0.2
COL28A1Q2UY09 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC006116.8-202ENST00000587620 1550 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC084018.2-201ENST00000613093 2607 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 TREML5P-201ENST00000421694 576 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 KRT17P7-201ENST00000451704 1104 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 IGHV3-71-201ENST00000523324 359 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC116407.2-201ENST00000613639 860 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AL662799.1-202ENST00000614205 422 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AC092919.2-201ENST00000623631 1645 ntBASIC16.3■□□□□ 0.2
COL28A1Q2UY09 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL28A1Q2UY09 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 AC112191.1-201ENST00000523689 701 ntBASIC16.29■□□□□ 0.2
COL28A1Q2UY09 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 AC026120.1-201ENST00000611536 926 ntBASIC16.29■□□□□ 0.2
COL28A1Q2UY09 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL28A1Q2UY09 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms