Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PKNOX1P55347 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
PKNOX1P55347 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
PKNOX1P55347 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.68■□□□□ 0.26
PKNOX1P55347 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.68■□□□□ 0.26
PKNOX1P55347 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.68■□□□□ 0.26
PKNOX1P55347 AP002490.2-201ENST00000524791 560 ntBASIC16.68■□□□□ 0.26
PKNOX1P55347 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
PKNOX1P55347 BNIP3P18-201ENST00000593976 575 ntBASIC16.68■□□□□ 0.26
PKNOX1P55347 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.68■□□□□ 0.26
PKNOX1P55347 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PKNOX1P55347 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.67■□□□□ 0.26
PKNOX1P55347 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.67■□□□□ 0.26
PKNOX1P55347 PAUPAR-201ENST00000630360 2965 ntBASIC16.67■□□□□ 0.26
PKNOX1P55347 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 NSUN5P1-202ENST00000421140 1535 ntBASIC16.67■□□□□ 0.26
PKNOX1P55347 NSUN5P2-203ENST00000457352 1529 ntBASIC16.67■□□□□ 0.26
PKNOX1P55347 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.67■□□□□ 0.26
PKNOX1P55347 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
PKNOX1P55347 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
PKNOX1P55347 TOB2P1-201ENST00000469761 992 ntBASIC16.67■□□□□ 0.26
PKNOX1P55347 AC096582.2-201ENST00000510860 516 ntBASIC16.67■□□□□ 0.26
PKNOX1P55347 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.67■□□□□ 0.26
PKNOX1P55347 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.67■□□□□ 0.26
PKNOX1P55347 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.67■□□□□ 0.26
PKNOX1P55347 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PKNOX1P55347 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.67■□□□□ 0.26
PKNOX1P55347 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PKNOX1P55347 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.67■□□□□ 0.26
PKNOX1P55347 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
PKNOX1P55347 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.67■□□□□ 0.26
PKNOX1P55347 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
PKNOX1P55347 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PKNOX1P55347 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.66■□□□□ 0.26
PKNOX1P55347 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.66■□□□□ 0.26
PKNOX1P55347 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PKNOX1P55347 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
PKNOX1P55347 ACTG1P4-201ENST00000425123 1122 ntBASIC16.66■□□□□ 0.26
PKNOX1P55347 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 AP002383.4-201ENST00000442518 975 ntBASIC16.66■□□□□ 0.26
PKNOX1P55347 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 SIGLEC30P-201ENST00000455569 941 ntBASIC16.66■□□□□ 0.26
PKNOX1P55347 KRT18P21-201ENST00000515767 1272 ntBASIC16.66■□□□□ 0.26
PKNOX1P55347 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKNOX1P55347 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms