Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.63■□□□□ 0.25
SHMT2P34897 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SHMT2P34897 PI4KAP1-204ENST00000612579 1703 ntBASIC16.63■□□□□ 0.25
SHMT2P34897 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.63■□□□□ 0.25
SHMT2P34897 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
SHMT2P34897 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.63■□□□□ 0.25
SHMT2P34897 AC009947.1-201ENST00000444350 727 ntBASIC16.63■□□□□ 0.25
SHMT2P34897 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.63■□□□□ 0.25
SHMT2P34897 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.63■□□□□ 0.25
SHMT2P34897 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.63■□□□□ 0.25
SHMT2P34897 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.63■□□□□ 0.25
SHMT2P34897 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.63■□□□□ 0.25
SHMT2P34897 AC106730.1-201ENST00000566722 1090 ntBASIC16.63■□□□□ 0.25
SHMT2P34897 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.63■□□□□ 0.25
SHMT2P34897 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.63■□□□□ 0.25
SHMT2P34897 TERC-201ENST00000602385 541 ntBASIC16.63■□□□□ 0.25
SHMT2P34897 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SHMT2P34897 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.63■□□□□ 0.25
SHMT2P34897 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.63■□□□□ 0.25
SHMT2P34897 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.63■□□□□ 0.25
SHMT2P34897 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.63■□□□□ 0.25
SHMT2P34897 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SHMT2P34897 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.63■□□□□ 0.25
SHMT2P34897 PCDHA14-201ENST00000506751 2298 ntBASIC16.63■□□□□ 0.25
SHMT2P34897 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHMT2P34897 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SHMT2P34897 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SHMT2P34897 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SHMT2P34897 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SHMT2P34897 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.62■□□□□ 0.25
SHMT2P34897 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.62■□□□□ 0.25
SHMT2P34897 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.62■□□□□ 0.25
SHMT2P34897 AC108073.2-201ENST00000464002 357 ntBASIC16.62■□□□□ 0.25
SHMT2P34897 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.62■□□□□ 0.25
SHMT2P34897 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.62■□□□□ 0.25
SHMT2P34897 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SHMT2P34897 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.62■□□□□ 0.25
SHMT2P34897 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHMT2P34897 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.61■□□□□ 0.25
SHMT2P34897 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.61■□□□□ 0.25
SHMT2P34897 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.61■□□□□ 0.25
SHMT2P34897 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.61■□□□□ 0.25
SHMT2P34897 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 MRPL20P1-201ENST00000400819 433 ntBASIC16.61■□□□□ 0.25
SHMT2P34897 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.61■□□□□ 0.25
SHMT2P34897 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.61■□□□□ 0.25
SHMT2P34897 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SHMT2P34897 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.61■□□□□ 0.25
SHMT2P34897 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SHMT2P34897 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.61■□□□□ 0.25
SHMT2P34897 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SHMT2P34897 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SHMT2P34897 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SHMT2P34897 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SHMT2P34897 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SHMT2P34897 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SHMT2P34897 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SHMT2P34897 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHMT2P34897 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHMT2P34897 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.6■□□□□ 0.25
SHMT2P34897 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.6■□□□□ 0.25
SHMT2P34897 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.6■□□□□ 0.25
SHMT2P34897 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms