Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.3■□□□□ 0.36
COL9A1P20849 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.29■□□□□ 0.36
COL9A1P20849 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.29■□□□□ 0.36
COL9A1P20849 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.29■□□□□ 0.36
COL9A1P20849 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.29■□□□□ 0.36
COL9A1P20849 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.29■□□□□ 0.36
COL9A1P20849 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
COL9A1P20849 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.29■□□□□ 0.36
COL9A1P20849 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL9A1P20849 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL9A1P20849 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 MIR7845-201ENST00000618396 99 ntBASIC17.29■□□□□ 0.36
COL9A1P20849 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
COL9A1P20849 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.29■□□□□ 0.36
COL9A1P20849 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
COL9A1P20849 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.29■□□□□ 0.36
COL9A1P20849 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
COL9A1P20849 LINC00304-203ENST00000565008 1864 ntBASIC17.29■□□□□ 0.36
COL9A1P20849 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL9A1P20849 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL9A1P20849 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.29■□□□□ 0.36
COL9A1P20849 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL9A1P20849 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.28■□□□□ 0.36
COL9A1P20849 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.28■□□□□ 0.36
COL9A1P20849 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 BICD1-207ENST00000551848 1962 ntBASIC17.28■□□□□ 0.36
COL9A1P20849 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
COL9A1P20849 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL9A1P20849 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.28■□□□□ 0.36
COL9A1P20849 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL9A1P20849 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.28■□□□□ 0.36
COL9A1P20849 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.28■□□□□ 0.36
COL9A1P20849 AC107918.2-201ENST00000530817 355 ntBASIC17.28■□□□□ 0.36
COL9A1P20849 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL9A1P20849 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC17.28■□□□□ 0.36
COL9A1P20849 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
COL9A1P20849 BNIP3P41-202ENST00000616656 861 ntBASIC17.28■□□□□ 0.36
COL9A1P20849 AC007431.3-201ENST00000623221 587 ntBASIC17.28■□□□□ 0.36
COL9A1P20849 AC128714.1-201ENST00000637035 887 ntBASIC17.28■□□□□ 0.36
COL9A1P20849 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COL9A1P20849 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL9A1P20849 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.28■□□□□ 0.36
COL9A1P20849 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.28■□□□□ 0.36
COL9A1P20849 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL9A1P20849 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL9A1P20849 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL9A1P20849 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL9A1P20849 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 AC005229.1-201ENST00000392885 409 ntBASIC17.27■□□□□ 0.36
COL9A1P20849 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 LBH-202ENST00000401506 485 ntTSL 3 BASIC17.27■□□□□ 0.36
COL9A1P20849 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.27■□□□□ 0.36
COL9A1P20849 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.27■□□□□ 0.36
COL9A1P20849 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.27■□□□□ 0.36
COL9A1P20849 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL9A1P20849 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.35
COL9A1P20849 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL9A1P20849 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL9A1P20849 LYSMD4-203ENST00000378904 2122 ntBASIC17.27■□□□□ 0.35
COL9A1P20849 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms