Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PDGFRAP16234 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDGFRAP16234 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDGFRAP16234 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.8■□□□□ 0.44
PDGFRAP16234 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.8■□□□□ 0.44
PDGFRAP16234 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDGFRAP16234 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.79■□□□□ 0.44
PDGFRAP16234 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PDGFRAP16234 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.79■□□□□ 0.44
PDGFRAP16234 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.79■□□□□ 0.44
PDGFRAP16234 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
PDGFRAP16234 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PDGFRAP16234 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.79■□□□□ 0.44
PDGFRAP16234 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.79■□□□□ 0.44
PDGFRAP16234 AC087163.2-201ENST00000457299 853 ntBASIC17.79■□□□□ 0.44
PDGFRAP16234 RPL13AP23-201ENST00000480739 586 ntBASIC17.79■□□□□ 0.44
PDGFRAP16234 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.79■□□□□ 0.44
PDGFRAP16234 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
PDGFRAP16234 KRT8P49-201ENST00000604166 1432 ntBASIC17.79■□□□□ 0.44
PDGFRAP16234 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.79■□□□□ 0.44
PDGFRAP16234 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.79■□□□□ 0.44
PDGFRAP16234 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 AC078925.2-201ENST00000624013 1973 ntBASIC17.79■□□□□ 0.44
PDGFRAP16234 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDGFRAP16234 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
PDGFRAP16234 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.78■□□□□ 0.44
PDGFRAP16234 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PDGFRAP16234 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.78■□□□□ 0.44
PDGFRAP16234 FLJ38576-201ENST00000623820 2459 ntBASIC17.78■□□□□ 0.44
PDGFRAP16234 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PDGFRAP16234 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PDGFRAP16234 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 IGHV3-22-201ENST00000520721 359 ntBASIC17.78■□□□□ 0.44
PDGFRAP16234 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.78■□□□□ 0.44
PDGFRAP16234 AC008667.4-201ENST00000607370 168 ntBASIC17.78■□□□□ 0.44
PDGFRAP16234 GGTLC5P-201ENST00000617623 998 ntBASIC17.78■□□□□ 0.44
PDGFRAP16234 AC117500.6-201ENST00000624871 588 ntBASIC17.78■□□□□ 0.44
PDGFRAP16234 AC005593.1-201ENST00000624894 515 ntBASIC17.78■□□□□ 0.44
PDGFRAP16234 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.78■□□□□ 0.44
PDGFRAP16234 PGM5P2-202ENST00000637225 1043 ntBASIC17.78■□□□□ 0.44
PDGFRAP16234 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.78■□□□□ 0.44
PDGFRAP16234 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
PDGFRAP16234 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.78■□□□□ 0.44
PDGFRAP16234 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.78■□□□□ 0.44
PDGFRAP16234 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 AC002310.6-201ENST00000624451 1377 ntBASIC17.78■□□□□ 0.44
PDGFRAP16234 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PDGFRAP16234 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 AL645728.1-201ENST00000366221 2101 ntBASIC17.77■□□□□ 0.44
PDGFRAP16234 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.77■□□□□ 0.44
PDGFRAP16234 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.77■□□□□ 0.44
PDGFRAP16234 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PDGFRAP16234 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.77■□□□□ 0.44
PDGFRAP16234 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.77■□□□□ 0.44
PDGFRAP16234 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDGFRAP16234 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.77■□□□□ 0.44
PDGFRAP16234 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms