Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.41■□□□□ 0.22
CLDN9O95484 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLDN9O95484 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.4■□□□□ 0.22
CLDN9O95484 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN9O95484 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
CLDN9O95484 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN9O95484 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
CLDN9O95484 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLDN9O95484 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CLDN9O95484 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN9O95484 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN9O95484 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
CLDN9O95484 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CLDN9O95484 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN9O95484 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.4■□□□□ 0.22
CLDN9O95484 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.4■□□□□ 0.22
CLDN9O95484 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN9O95484 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CLDN9O95484 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.4■□□□□ 0.22
CLDN9O95484 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLDN9O95484 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLDN9O95484 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
CLDN9O95484 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLDN9O95484 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.22
CLDN9O95484 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CLDN9O95484 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
CLDN9O95484 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.39■□□□□ 0.21
CLDN9O95484 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLDN9O95484 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.39■□□□□ 0.21
CLDN9O95484 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.39■□□□□ 0.21
CLDN9O95484 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.39■□□□□ 0.21
CLDN9O95484 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.39■□□□□ 0.21
CLDN9O95484 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.39■□□□□ 0.21
CLDN9O95484 SAPCD2P3-201ENST00000455031 850 ntBASIC16.39■□□□□ 0.21
CLDN9O95484 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.39■□□□□ 0.21
CLDN9O95484 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.39■□□□□ 0.21
CLDN9O95484 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.39■□□□□ 0.21
CLDN9O95484 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
CLDN9O95484 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.39■□□□□ 0.21
CLDN9O95484 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.39■□□□□ 0.21
CLDN9O95484 AC004706.3-202ENST00000621574 984 ntBASIC16.39■□□□□ 0.21
CLDN9O95484 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.39■□□□□ 0.21
CLDN9O95484 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.39■□□□□ 0.21
CLDN9O95484 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CLDN9O95484 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.39■□□□□ 0.21
CLDN9O95484 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.39■□□□□ 0.21
CLDN9O95484 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLDN9O95484 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CLDN9O95484 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLDN9O95484 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLDN9O95484 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
CLDN9O95484 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLDN9O95484 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.38■□□□□ 0.21
CLDN9O95484 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLDN9O95484 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLDN9O95484 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CLDN9O95484 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLDN9O95484 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLDN9O95484 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.38■□□□□ 0.21
CLDN9O95484 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.38■□□□□ 0.21
CLDN9O95484 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLDN9O95484 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CLDN9O95484 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms