Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.59■□□□□ 0.73
CTDNEP1O95476 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 AC108073.2-201ENST00000464002 357 ntBASIC19.59■□□□□ 0.73
CTDNEP1O95476 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.59■□□□□ 0.73
CTDNEP1O95476 SLC25A6P4-201ENST00000586535 553 ntBASIC19.59■□□□□ 0.73
CTDNEP1O95476 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.59■□□□□ 0.73
CTDNEP1O95476 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CTDNEP1O95476 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CTDNEP1O95476 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
CTDNEP1O95476 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CTDNEP1O95476 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CTDNEP1O95476 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.58■□□□□ 0.73
CTDNEP1O95476 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.58■□□□□ 0.73
CTDNEP1O95476 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.58■□□□□ 0.73
CTDNEP1O95476 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
CTDNEP1O95476 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CTDNEP1O95476 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CTDNEP1O95476 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTDNEP1O95476 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CTDNEP1O95476 AC009078.2-202ENST00000463353 338 ntBASIC19.58■□□□□ 0.72
CTDNEP1O95476 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CTDNEP1O95476 GGTLC5P-201ENST00000617623 998 ntBASIC19.58■□□□□ 0.72
CTDNEP1O95476 AC004790.2-201ENST00000623588 572 ntBASIC19.58■□□□□ 0.72
CTDNEP1O95476 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 AC131009.4-201ENST00000624048 1740 ntBASIC19.58■□□□□ 0.72
CTDNEP1O95476 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTDNEP1O95476 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTDNEP1O95476 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CTDNEP1O95476 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CTDNEP1O95476 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CTDNEP1O95476 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.57■□□□□ 0.72
CTDNEP1O95476 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CTDNEP1O95476 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CTDNEP1O95476 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CTDNEP1O95476 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
CTDNEP1O95476 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.57■□□□□ 0.72
CTDNEP1O95476 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.57■□□□□ 0.72
CTDNEP1O95476 AC092910.1-201ENST00000482027 1129 ntBASIC19.57■□□□□ 0.72
CTDNEP1O95476 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CTDNEP1O95476 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.57■□□□□ 0.72
CTDNEP1O95476 AL773604.1-201ENST00000617417 272 ntBASIC19.57■□□□□ 0.72
CTDNEP1O95476 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.57■□□□□ 0.72
CTDNEP1O95476 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.57■□□□□ 0.72
CTDNEP1O95476 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CTDNEP1O95476 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CTDNEP1O95476 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CTDNEP1O95476 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 AC091167.2-201ENST00000579581 588 ntBASIC19.56■□□□□ 0.72
CTDNEP1O95476 MIR1199-201ENST00000621445 119 ntBASIC19.56■□□□□ 0.72
CTDNEP1O95476 AC116407.3-201ENST00000623905 1129 ntBASIC19.56■□□□□ 0.72
CTDNEP1O95476 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CTDNEP1O95476 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CTDNEP1O95476 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms