Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.53■□□□□ 0.24
SDC3O75056 MIR943-201ENST00000401286 94 ntBASIC16.53■□□□□ 0.24
SDC3O75056 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.53■□□□□ 0.24
SDC3O75056 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.53■□□□□ 0.24
SDC3O75056 GPS2P2-201ENST00000430745 888 ntBASIC16.53■□□□□ 0.24
SDC3O75056 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 COX20P2-201ENST00000452636 358 ntBASIC16.53■□□□□ 0.24
SDC3O75056 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.53■□□□□ 0.24
SDC3O75056 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.53■□□□□ 0.24
SDC3O75056 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SDC3O75056 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SDC3O75056 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.52■□□□□ 0.24
SDC3O75056 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 TUBB3P1-201ENST00000405796 1332 ntBASIC16.52■□□□□ 0.24
SDC3O75056 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
SDC3O75056 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SDC3O75056 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SDC3O75056 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.52■□□□□ 0.24
SDC3O75056 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.52■□□□□ 0.24
SDC3O75056 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.52■□□□□ 0.24
SDC3O75056 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.52■□□□□ 0.24
SDC3O75056 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 AC125807.1-201ENST00000483097 614 ntBASIC16.52■□□□□ 0.24
SDC3O75056 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
SDC3O75056 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.52■□□□□ 0.24
SDC3O75056 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.52■□□□□ 0.24
SDC3O75056 AC015911.4-201ENST00000588022 1070 ntBASIC16.52■□□□□ 0.24
SDC3O75056 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDC3O75056 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.52■□□□□ 0.24
SDC3O75056 AL353732.1-201ENST00000569618 1459 ntBASIC16.52■□□□□ 0.23
SDC3O75056 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SDC3O75056 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.52■□□□□ 0.23
SDC3O75056 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.52■□□□□ 0.23
SDC3O75056 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
SDC3O75056 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SDC3O75056 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SDC3O75056 EGFEM1P-202ENST00000431685 1563 ntBASIC16.51■□□□□ 0.23
SDC3O75056 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.51■□□□□ 0.23
SDC3O75056 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SDC3O75056 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.51■□□□□ 0.23
SDC3O75056 KLF2P3-201ENST00000451977 1087 ntBASIC16.51■□□□□ 0.23
SDC3O75056 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 INGX-202ENST00000489074 768 ntBASIC16.51■□□□□ 0.23
SDC3O75056 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.51■□□□□ 0.23
SDC3O75056 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 AC138761.1-201ENST00000584393 385 ntBASIC16.51■□□□□ 0.23
SDC3O75056 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.51■□□□□ 0.23
SDC3O75056 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SDC3O75056 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.51■□□□□ 0.23
SDC3O75056 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms