Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZCCHC14-201ENST00000268616 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 AC105917.1-201ENST00000506637 2539 ntBASIC13.69□□□□□ -0.22
HMGB3O15347 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.69□□□□□ -0.22
HMGB3O15347 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC13.69□□□□□ -0.22
HMGB3O15347 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC13.69□□□□□ -0.22
HMGB3O15347 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 WWOX-216ENST00000569818 525 ntBASIC13.69□□□□□ -0.22
HMGB3O15347 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
HMGB3O15347 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.69□□□□□ -0.22
HMGB3O15347 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HMGB3O15347 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC13.69□□□□□ -0.22
HMGB3O15347 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HMGB3O15347 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HMGB3O15347 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.69□□□□□ -0.22
HMGB3O15347 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HMGB3O15347 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 AKAP13-202ENST00000394510 9128 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HMGB3O15347 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 ILF2-202ENST00000368681 726 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HMGB3O15347 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 SAPCD2P4-201ENST00000424595 1171 ntBASIC13.68□□□□□ -0.22
HMGB3O15347 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC13.68□□□□□ -0.22
HMGB3O15347 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC13.68□□□□□ -0.22
HMGB3O15347 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC13.68□□□□□ -0.22
HMGB3O15347 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC13.68□□□□□ -0.22
HMGB3O15347 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC13.68□□□□□ -0.22
HMGB3O15347 CD177P1-201ENST00000606252 935 ntBASIC13.68□□□□□ -0.22
HMGB3O15347 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC13.68□□□□□ -0.22
HMGB3O15347 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC13.68□□□□□ -0.22
HMGB3O15347 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.68□□□□□ -0.22
HMGB3O15347 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HMGB3O15347 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms