Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC12.55□□□□□ -0.4
CDC42SE1Q9NRR8 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 AF106564.1-201ENST00000607058 2553 ntBASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDC42SE1Q9NRR8 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 DUSP8P4-201ENST00000399538 1761 ntBASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDC42SE1Q9NRR8 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CDC42SE1Q9NRR8 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CDC42SE1Q9NRR8 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
CDC42SE1Q9NRR8 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CDC42SE1Q9NRR8 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDC42SE1Q9NRR8 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CDC42SE1Q9NRR8 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
CDC42SE1Q9NRR8 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CDC42SE1Q9NRR8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CDC42SE1Q9NRR8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDC42SE1Q9NRR8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC12.51□□□□□ -0.41
CDC42SE1Q9NRR8 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDC42SE1Q9NRR8 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC12.51□□□□□ -0.41
CDC42SE1Q9NRR8 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDC42SE1Q9NRR8 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDC42SE1Q9NRR8 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 PALM-208ENST00000592155 2272 ntTSL 4 BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDC42SE1Q9NRR8 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDC42SE1Q9NRR8 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDC42SE1Q9NRR8 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CDC42SE1Q9NRR8 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDC42SE1Q9NRR8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDC42SE1Q9NRR8 AL139125.2-201ENST00000623134 1869 ntBASIC12.48□□□□□ -0.41
CDC42SE1Q9NRR8 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDC42SE1Q9NRR8 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
CDC42SE1Q9NRR8 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDC42SE1Q9NRR8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 DUSP8P5-201ENST00000422884 1815 ntBASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CDC42SE1Q9NRR8 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDC42SE1Q9NRR8 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC12.46□□□□□ -0.41
CDC42SE1Q9NRR8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
CDC42SE1Q9NRR8 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
CDC42SE1Q9NRR8 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
CDC42SE1Q9NRR8 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CDC42SE1Q9NRR8 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms