Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZNRF2P1-201ENST00000441407 443 ntBASIC19.18■□□□□ 0.66
CLRN3Q8NCR9 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN3Q8NCR9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN3Q8NCR9 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN3Q8NCR9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN3Q8NCR9 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.18■□□□□ 0.66
CLRN3Q8NCR9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN3Q8NCR9 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN3Q8NCR9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN3Q8NCR9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.17■□□□□ 0.66
CLRN3Q8NCR9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN3Q8NCR9 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.17■□□□□ 0.66
CLRN3Q8NCR9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN3Q8NCR9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN3Q8NCR9 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN3Q8NCR9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN3Q8NCR9 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN3Q8NCR9 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CLRN3Q8NCR9 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN3Q8NCR9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CLRN3Q8NCR9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.15■□□□□ 0.66
CLRN3Q8NCR9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN3Q8NCR9 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN3Q8NCR9 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.15■□□□□ 0.66
CLRN3Q8NCR9 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CLRN3Q8NCR9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN3Q8NCR9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CLRN3Q8NCR9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN3Q8NCR9 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN3Q8NCR9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN3Q8NCR9 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN3Q8NCR9 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN3Q8NCR9 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 WHAMMP3-201ENST00000611636 1609 ntBASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CLRN3Q8NCR9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN3Q8NCR9 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 AP004609.3-201ENST00000610705 1884 ntBASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.11■□□□□ 0.65
CLRN3Q8NCR9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 AC018358.1-201ENST00000631079 1402 ntBASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 EP400NL-214ENST00000641289 2402 ntBASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN3Q8NCR9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 LINC01124-201ENST00000409786 2117 ntBASIC19.09■□□□□ 0.65
CLRN3Q8NCR9 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.08■□□□□ 0.65
CLRN3Q8NCR9 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLRN3Q8NCR9 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLRN3Q8NCR9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLRN3Q8NCR9 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CLRN3Q8NCR9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
CLRN3Q8NCR9 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLRN3Q8NCR9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLRN3Q8NCR9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN3Q8NCR9 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.07■□□□□ 0.64
CLRN3Q8NCR9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN3Q8NCR9 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN3Q8NCR9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms