Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC32.17■■■□□ 2.74
USHBP1Q8N6Y0 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC32.17■■■□□ 2.74
USHBP1Q8N6Y0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC32.17■■■□□ 2.74
USHBP1Q8N6Y0 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC32.16■■■□□ 2.74
USHBP1Q8N6Y0 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
USHBP1Q8N6Y0 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
USHBP1Q8N6Y0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
USHBP1Q8N6Y0 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
USHBP1Q8N6Y0 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
USHBP1Q8N6Y0 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC32.15■■■□□ 2.74
USHBP1Q8N6Y0 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
USHBP1Q8N6Y0 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.74
USHBP1Q8N6Y0 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC32.14■■■□□ 2.74
USHBP1Q8N6Y0 CREM-229ENST00000474362 1030 ntTSL 2 BASIC32.14■■■□□ 2.74
USHBP1Q8N6Y0 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
USHBP1Q8N6Y0 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC32.13■■■□□ 2.73
USHBP1Q8N6Y0 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
USHBP1Q8N6Y0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC32.12■■■□□ 2.73
USHBP1Q8N6Y0 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC32.12■■■□□ 2.73
USHBP1Q8N6Y0 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC32.11■■■□□ 2.73
USHBP1Q8N6Y0 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
USHBP1Q8N6Y0 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC32.1■■■□□ 2.73
USHBP1Q8N6Y0 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
USHBP1Q8N6Y0 AC142472.1-201ENST00000612013 1741 ntBASIC32.1■■■□□ 2.73
USHBP1Q8N6Y0 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC32.1■■■□□ 2.73
USHBP1Q8N6Y0 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC32.09■■■□□ 2.73
USHBP1Q8N6Y0 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
USHBP1Q8N6Y0 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
USHBP1Q8N6Y0 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC32.09■■■□□ 2.73
USHBP1Q8N6Y0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC32.09■■■□□ 2.73
USHBP1Q8N6Y0 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC32.08■■■□□ 2.73
USHBP1Q8N6Y0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC32.08■■■□□ 2.73
USHBP1Q8N6Y0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC32.08■■■□□ 2.73
USHBP1Q8N6Y0 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC32.08■■■□□ 2.73
USHBP1Q8N6Y0 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC32.08■■■□□ 2.73
USHBP1Q8N6Y0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC32.08■■■□□ 2.73
USHBP1Q8N6Y0 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
USHBP1Q8N6Y0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC32.07■■■□□ 2.72
USHBP1Q8N6Y0 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
USHBP1Q8N6Y0 Z92544.1-202ENST00000571933 1220 ntBASIC32.07■■■□□ 2.72
USHBP1Q8N6Y0 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
USHBP1Q8N6Y0 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
USHBP1Q8N6Y0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC32.05■■■□□ 2.72
USHBP1Q8N6Y0 GRAMD4P7-201ENST00000578182 1232 ntBASIC32.05■■■□□ 2.72
USHBP1Q8N6Y0 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
USHBP1Q8N6Y0 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USHBP1Q8N6Y0 AP004609.3-201ENST00000610705 1884 ntBASIC32.04■■■□□ 2.72
USHBP1Q8N6Y0 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USHBP1Q8N6Y0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
USHBP1Q8N6Y0 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
USHBP1Q8N6Y0 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC32.04■■■□□ 2.72
USHBP1Q8N6Y0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC32.04■■■□□ 2.72
USHBP1Q8N6Y0 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC32.03■■■□□ 2.72
USHBP1Q8N6Y0 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC32.03■■■□□ 2.72
USHBP1Q8N6Y0 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
USHBP1Q8N6Y0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC32.03■■■□□ 2.72
USHBP1Q8N6Y0 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
USHBP1Q8N6Y0 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
USHBP1Q8N6Y0 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
USHBP1Q8N6Y0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
USHBP1Q8N6Y0 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC32.02■■■□□ 2.72
USHBP1Q8N6Y0 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC32.02■■■□□ 2.72
USHBP1Q8N6Y0 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC32.01■■■□□ 2.72
USHBP1Q8N6Y0 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.71
USHBP1Q8N6Y0 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC32.01■■■□□ 2.71
USHBP1Q8N6Y0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC32.01■■■□□ 2.71
USHBP1Q8N6Y0 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC32.01■■■□□ 2.71
USHBP1Q8N6Y0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
USHBP1Q8N6Y0 MIR4787-201ENST00000607364 84 ntBASIC32.01■■■□□ 2.71
USHBP1Q8N6Y0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC32.01■■■□□ 2.71
USHBP1Q8N6Y0 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
USHBP1Q8N6Y0 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC32■■■□□ 2.71
USHBP1Q8N6Y0 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC32■■■□□ 2.71
USHBP1Q8N6Y0 AC019069.1-201ENST00000610008 1333 ntBASIC32■■■□□ 2.71
USHBP1Q8N6Y0 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.99■■■□□ 2.71
USHBP1Q8N6Y0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
USHBP1Q8N6Y0 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
USHBP1Q8N6Y0 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
USHBP1Q8N6Y0 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
USHBP1Q8N6Y0 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.99■■■□□ 2.71
USHBP1Q8N6Y0 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC31.98■■■□□ 2.71
USHBP1Q8N6Y0 UNC93B8-201ENST00000511903 705 ntBASIC31.98■■■□□ 2.71
USHBP1Q8N6Y0 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
USHBP1Q8N6Y0 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC31.96■■■□□ 2.71
USHBP1Q8N6Y0 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
USHBP1Q8N6Y0 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
USHBP1Q8N6Y0 KRT125P-201ENST00000546827 989 ntBASIC31.96■■■□□ 2.71
USHBP1Q8N6Y0 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC31.96■■■□□ 2.71
USHBP1Q8N6Y0 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
USHBP1Q8N6Y0 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC31.95■■■□□ 2.71
USHBP1Q8N6Y0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
USHBP1Q8N6Y0 BX664725.1-201ENST00000438252 379 ntBASIC31.95■■■□□ 2.71
USHBP1Q8N6Y0 AC022616.5-201ENST00000518796 181 ntBASIC31.95■■■□□ 2.71
USHBP1Q8N6Y0 AC120024.1-201ENST00000562672 995 ntBASIC31.95■■■□□ 2.71
USHBP1Q8N6Y0 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
USHBP1Q8N6Y0 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.95■■■□□ 2.7
USHBP1Q8N6Y0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.7
USHBP1Q8N6Y0 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.7
USHBP1Q8N6Y0 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
USHBP1Q8N6Y0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms