Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 CPZ-209ENST00000515606 2464 ntTSL 1 (best)20.2■□□□□ 0.825e-6■■□□□ 11.5
DDX42Q86XP3 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.825e-6■■□□□ 11.5
DDX42Q86XP3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.85e-6■■□□□ 11.5
DDX42Q86XP3 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.735e-6■■□□□ 11.5
DDX42Q86XP3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.655e-6■■□□□ 11.5
DDX42Q86XP3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.74■□□□□ 0.595e-6■■□□□ 11.5
DDX42Q86XP3 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.495e-6■■□□□ 11.5
DDX42Q86XP3 AKAP8-202ENST00000537303 1350 ntTSL 217.92■□□□□ 0.465e-6■■□□□ 11.5
DDX42Q86XP3 SLC38A2-213ENST00000553252 846 ntTSL 217.81■□□□□ 0.441e-7■■□□□ 11.5
DDX42Q86XP3 SLC38A2-210ENST00000551405 526 ntTSL 417.46■□□□□ 0.391e-7■■□□□ 11.5
DDX42Q86XP3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.28■□□□□ 0.365e-6■■□□□ 11.5
DDX42Q86XP3 CPZ-208ENST00000514875 597 ntTSL 317.28■□□□□ 0.365e-6■■□□□ 11.5
DDX42Q86XP3 RPS6KA3-202ENST00000438357 530 ntTSL 515.82■□□□□ 0.125e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.095e-6■■□□□ 11.5
DDX42Q86XP3 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.095e-6■■□□□ 11.5
DDX42Q86XP3 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC15.57■□□□□ 0.085e-6■■□□□ 11.5
DDX42Q86XP3 DAZAP1-209ENST00000590419 508 ntTSL 315.39■□□□□ 0.055e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.02□□□□□ -0.015e-6■■□□□ 11.5
DDX42Q86XP3 GPR78-207ENST00000514302 4944 ntTSL 214.9□□□□□ -0.025e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-225ENST00000553064 1786 ntTSL 514.11□□□□□ -0.155e-6■■□□□ 11.5
DDX42Q86XP3 AKAP8-201ENST00000269701 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.185e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-201ENST00000359282 1730 ntTSL 1 (best) BASIC13.56□□□□□ -0.245e-6■■□□□ 11.5
DDX42Q86XP3 SPAG5-201ENST00000321765 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.285e-6■■□□□ 11.5
DDX42Q86XP3 ZSWIM8-202ENST00000412198 3611 ntTSL 212.93□□□□□ -0.345e-6■■□□□ 11.5
DDX42Q86XP3 ZSWIM8-217ENST00000603409 842 ntTSL 512.89□□□□□ -0.355e-6■■□□□ 11.5
DDX42Q86XP3 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.355e-6■■□□□ 11.5
DDX42Q86XP3 ZSWIM8-214ENST00000603187 3713 ntTSL 1 (best)12.76□□□□□ -0.375e-6■■□□□ 11.5
DDX42Q86XP3 CENPC-205ENST00000510189 2917 ntTSL 1 (best)12.7□□□□□ -0.385e-6■■□□□ 11.5
DDX42Q86XP3 SLC6A8-208ENST00000467402 308 ntTSL 512.66□□□□□ -0.385e-6■■□□□ 11.5
DDX42Q86XP3 ZSWIM8-222ENST00000604754 3369 ntTSL 1 (best)12.22□□□□□ -0.455e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-208ENST00000546652 823 ntTSL 512.14□□□□□ -0.475e-6■■□□□ 11.5
DDX42Q86XP3 GOLGA3-202ENST00000450791 8870 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.485e-6■■□□□ 11.5
DDX42Q86XP3 GOLGA3-207ENST00000545875 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.495e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-203ENST00000437231 3026 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.535e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-205ENST00000447282 3077 ntTSL 5 BASIC11.51□□□□□ -0.575e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-226ENST00000562264 1145 ntTSL 511.45□□□□□ -0.585e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-204ENST00000439930 1296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.585e-6■■□□□ 11.5
DDX42Q86XP3 AC023509.1-201ENST00000547717 1571 ntTSL 2 BASIC11.24□□□□□ -0.615e-6■■□□□ 11.5
DDX42Q86XP3 CENPC-203ENST00000506882 3436 ntTSL 1 (best)11.23□□□□□ -0.615e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-210ENST00000547859 1919 ntTSL 211.23□□□□□ -0.615e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-223ENST00000552819 1418 ntAPPRIS ALT1 TSL 2 BASIC10.6□□□□□ -0.715e-6■■□□□ 11.5
DDX42Q86XP3 CENPC-201ENST00000273853 6940 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.745e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-206ENST00000455667 2741 ntAPPRIS ALT1 TSL 1 (best) BASIC10.24□□□□□ -0.775e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-207ENST00000546463 1457 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.795e-6■■□□□ 11.5
DDX42Q86XP3 RPS6KA3-206ENST00000492128 553 ntTSL 410.1□□□□□ -0.795e-6■■□□□ 11.5
DDX42Q86XP3 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.811e-7■■□□□ 11.5
DDX42Q86XP3 PCBP2-218ENST00000550585 2543 ntTSL 59.79□□□□□ -0.845e-6■■□□□ 11.5
DDX42Q86XP3 COPB2-201ENST00000333188 3360 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.855e-6■■□□□ 11.5
DDX42Q86XP3 SPAG5-207ENST00000580083 978 ntTSL 39.71□□□□□ -0.865e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-222ENST00000552296 1342 ntAPPRIS ALT1 TSL 5 BASIC9.46□□□□□ -0.95e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-213ENST00000548933 1202 ntTSL 1 (best) BASIC9.42□□□□□ -0.95e-6■■□□□ 11.5
DDX42Q86XP3 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC9.32□□□□□ -0.925e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-211ENST00000547987 681 ntTSL 39.19□□□□□ -0.945e-6■■□□□ 11.5
DDX42Q86XP3 SPAG9-219ENST00000514613 2523 ntTSL 27.56□□□□□ -1.25e-6■■□□□ 11.5
DDX42Q86XP3 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.225e-6■■□□□ 11.5
DDX42Q86XP3 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.99□□□□□ -1.295e-6■■□□□ 11.5
DDX42Q86XP3 SPAG9-204ENST00000505173 2369 ntTSL 56.91□□□□□ -1.35e-6■■□□□ 11.5
DDX42Q86XP3 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.18□□□□□ -1.425e-6■■□□□ 11.5
DDX42Q86XP3 SARS-203ENST00000468588 1582 ntTSL 26.01□□□□□ -1.455e-6■■□□□ 11.5
DDX42Q86XP3 SPAG5-202ENST00000378976 755 ntTSL 55.96□□□□□ -1.465e-6■■□□□ 11.5
DDX42Q86XP3 PCBP2-214ENST00000549272 445 ntTSL 25.76□□□□□ -1.495e-6■■□□□ 11.5
DDX42Q86XP3 SPAG9-221ENST00000576492 554 ntTSL 55.11□□□□□ -1.595e-6■■□□□ 11.5
DDX42Q86XP3 SLC38A2-208ENST00000549258 4384 ntTSL 24.4□□□□□ -1.711e-7■■□□□ 11.5
DDX42Q86XP3 CENPC-206ENST00000513216 2799 ntTSL 54.32□□□□□ -1.725e-6■■□□□ 11.5
DDX42Q86XP3 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -04e-6■■□□□ 11.4
DDX42Q86XP3 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.164e-6■■□□□ 11.4
DDX42Q86XP3 FLNA-206ENST00000420627 8225 ntTSL 513.85□□□□□ -0.194e-6■■□□□ 11.4
DDX42Q86XP3 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.224e-6■■□□□ 11.4
DDX42Q86XP3 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.34e-6■■□□□ 11.4
DDX42Q86XP3 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.364e-6■■□□□ 11.4
DDX42Q86XP3 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC12.72□□□□□ -0.374e-6■■□□□ 11.4
DDX42Q86XP3 CCNL2-216ENST00000488340 1598 ntTSL 222.78■■□□□ 1.241e-6■□□□□ 11.3
DDX42Q86XP3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.841e-6■□□□□ 11.3
DDX42Q86XP3 CCNL2-213ENST00000481223 2815 ntTSL 220.04■□□□□ 0.81e-6■□□□□ 11.3
DDX42Q86XP3 CCNL2-215ENST00000482621 2059 ntTSL 216.13■□□□□ 0.171e-6■□□□□ 11.3
DDX42Q86XP3 CCNL2-218ENST00000496007 4452 ntTSL 214.9□□□□□ -0.021e-6■□□□□ 11.3
DDX42Q86XP3 CCNL2-209ENST00000471930 846 ntTSL 513.54□□□□□ -0.241e-6■□□□□ 11.3
DDX42Q86XP3 PTBP1-209ENST00000586481 578 ntTSL 320.96■□□□□ 0.953e-6■□□□□ 11.1
DDX42Q86XP3 PTBP1-214ENST00000589575 749 ntTSL 313.84□□□□□ -0.193e-6■□□□□ 11.1
DDX42Q86XP3 PTBP1-216ENST00000590887 642 ntTSL 313.39□□□□□ -0.273e-6■□□□□ 11.1
DDX42Q86XP3 PTBP1-211ENST00000587094 273 ntTSL 312.13□□□□□ -0.473e-6■□□□□ 11.1
DDX42Q86XP3 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC9.71□□□□□ -0.867e-13■□□□□ 11.1
DDX42Q86XP3 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC8.46□□□□□ -1.067e-13■□□□□ 11.1
DDX42Q86XP3 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.087e-13■□□□□ 11.1
DDX42Q86XP3 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.286e-26■□□□□ 11
DDX42Q86XP3 ACTG1-204ENST00000571721 813 ntTSL 519.89■□□□□ 0.776e-26■□□□□ 11
DDX42Q86XP3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.76e-26■□□□□ 11
DDX42Q86XP3 ACTG1-209ENST00000575659 742 ntTSL 318.09■□□□□ 0.496e-26■□□□□ 11
DDX42Q86XP3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.476e-26■□□□□ 11
DDX42Q86XP3 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.026e-26■□□□□ 11
DDX42Q86XP3 ACTG1-215ENST00000576917 1958 ntTSL 514.89□□□□□ -0.036e-26■□□□□ 11
DDX42Q86XP3 SLC6A8-209ENST00000476466 470 ntTSL 314.84□□□□□ -0.033e-9■□□□□ 11
DDX42Q86XP3 ACTG1-205ENST00000572105 1168 ntTSL 514.69□□□□□ -0.066e-26■□□□□ 11
DDX42Q86XP3 ACTG1-203ENST00000571691 761 ntTSL 314.02□□□□□ -0.176e-26■□□□□ 11
DDX42Q86XP3 ACTG1-202ENST00000570382 471 ntTSL 413.78□□□□□ -0.26e-26■□□□□ 11
DDX42Q86XP3 ACTG1-211ENST00000575994 856 ntTSL 313.63□□□□□ -0.236e-26■□□□□ 11
DDX42Q86XP3 ACTG1-213ENST00000576214 1024 ntTSL 513.36□□□□□ -0.276e-26■□□□□ 11
DDX42Q86XP3 ACTG1-216ENST00000615544 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.316e-26■□□□□ 11
DDX42Q86XP3 ACTG1-214ENST00000576544 1720 ntTSL 512.87□□□□□ -0.356e-26■□□□□ 11
DDX42Q86XP3 HMGN2-202ENST00000460563 1045 ntTSL 511.45□□□□□ -0.584e-7■□□□□ 11
Retrieved 100 of 2,477 protein–RNA pairs in 99.8 ms