Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 GPX1-201ENST00000419349 1106 ntBASIC23.86■■□□□ 1.41
ZNF549Q6P9A3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.86■■□□□ 1.41
ZNF549Q6P9A3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
ZNF549Q6P9A3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.85■■□□□ 1.41
ZNF549Q6P9A3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
ZNF549Q6P9A3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
ZNF549Q6P9A3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.85■■□□□ 1.41
ZNF549Q6P9A3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
ZNF549Q6P9A3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
ZNF549Q6P9A3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.84■■□□□ 1.41
ZNF549Q6P9A3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
ZNF549Q6P9A3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
ZNF549Q6P9A3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
ZNF549Q6P9A3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
ZNF549Q6P9A3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.84■■□□□ 1.41
ZNF549Q6P9A3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
ZNF549Q6P9A3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
ZNF549Q6P9A3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
ZNF549Q6P9A3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.4
ZNF549Q6P9A3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
ZNF549Q6P9A3 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.83■■□□□ 1.4
ZNF549Q6P9A3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
ZNF549Q6P9A3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
ZNF549Q6P9A3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.81■■□□□ 1.4
ZNF549Q6P9A3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
ZNF549Q6P9A3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
ZNF549Q6P9A3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ZNF549Q6P9A3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 AC135731.1-201ENST00000569415 2548 ntBASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 RP9P-202ENST00000450133 1212 ntBASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ZNF549Q6P9A3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
ZNF549Q6P9A3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
ZNF549Q6P9A3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.79■■□□□ 1.4
ZNF549Q6P9A3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.79■■□□□ 1.4
ZNF549Q6P9A3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.79■■□□□ 1.4
ZNF549Q6P9A3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
ZNF549Q6P9A3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF549Q6P9A3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ZNF549Q6P9A3 AC093536.1-201ENST00000569153 554 ntBASIC23.78■■□□□ 1.4
ZNF549Q6P9A3 AC007029.1-201ENST00000604183 313 ntBASIC23.78■■□□□ 1.4
ZNF549Q6P9A3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.78■■□□□ 1.4
ZNF549Q6P9A3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.78■■□□□ 1.4
ZNF549Q6P9A3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ZNF549Q6P9A3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.78■■□□□ 1.4
ZNF549Q6P9A3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF549Q6P9A3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF549Q6P9A3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF549Q6P9A3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF549Q6P9A3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.77■■□□□ 1.4
ZNF549Q6P9A3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.77■■□□□ 1.4
ZNF549Q6P9A3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
ZNF549Q6P9A3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ZNF549Q6P9A3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.76■■□□□ 1.39
ZNF549Q6P9A3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.76■■□□□ 1.39
ZNF549Q6P9A3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
ZNF549Q6P9A3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
ZNF549Q6P9A3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.75■■□□□ 1.39
ZNF549Q6P9A3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.75■■□□□ 1.39
ZNF549Q6P9A3 ABHD17AP3-201ENST00000503096 1137 ntBASIC23.75■■□□□ 1.39
ZNF549Q6P9A3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.75■■□□□ 1.39
ZNF549Q6P9A3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
ZNF549Q6P9A3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
ZNF549Q6P9A3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
ZNF549Q6P9A3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.74■■□□□ 1.39
ZNF549Q6P9A3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.74■■□□□ 1.39
ZNF549Q6P9A3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
ZNF549Q6P9A3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
ZNF549Q6P9A3 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
ZNF549Q6P9A3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
ZNF549Q6P9A3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
ZNF549Q6P9A3 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
ZNF549Q6P9A3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
ZNF549Q6P9A3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.72■■□□□ 1.39
ZNF549Q6P9A3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 AC097639.1-201ENST00000565519 1891 ntBASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
ZNF549Q6P9A3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms