Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC40Q4G0X9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC40Q4G0X9 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
CCDC40Q4G0X9 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.36■■□□□ 1.81
CCDC40Q4G0X9 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.35■■□□□ 1.81
CCDC40Q4G0X9 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC26.35■■□□□ 1.81
CCDC40Q4G0X9 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
CCDC40Q4G0X9 MIR3960-201ENST00000583311 91 ntBASIC26.35■■□□□ 1.81
CCDC40Q4G0X9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC40Q4G0X9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC40Q4G0X9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
CCDC40Q4G0X9 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC40Q4G0X9 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC40Q4G0X9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC40Q4G0X9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC40Q4G0X9 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC40Q4G0X9 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC40Q4G0X9 MIR4449-201ENST00000578365 66 ntBASIC26.33■■□□□ 1.81
CCDC40Q4G0X9 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.33■■□□□ 1.81
CCDC40Q4G0X9 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC40Q4G0X9 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC40Q4G0X9 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.33■■□□□ 1.8
CCDC40Q4G0X9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC40Q4G0X9 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.32■■□□□ 1.8
CCDC40Q4G0X9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC40Q4G0X9 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC40Q4G0X9 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CCDC40Q4G0X9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC40Q4G0X9 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.32■■□□□ 1.8
CCDC40Q4G0X9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC40Q4G0X9 ECEL1P2-201ENST00000461596 1295 ntBASIC26.31■■□□□ 1.8
CCDC40Q4G0X9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.31■■□□□ 1.8
CCDC40Q4G0X9 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC40Q4G0X9 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC40Q4G0X9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC40Q4G0X9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC40Q4G0X9 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC40Q4G0X9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC40Q4G0X9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC40Q4G0X9 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.3■■□□□ 1.8
CCDC40Q4G0X9 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC40Q4G0X9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC40Q4G0X9 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC40Q4G0X9 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.29■■□□□ 1.8
CCDC40Q4G0X9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC40Q4G0X9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.28■■□□□ 1.8
CCDC40Q4G0X9 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.28■■□□□ 1.8
CCDC40Q4G0X9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CCDC40Q4G0X9 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CCDC40Q4G0X9 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC40Q4G0X9 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CCDC40Q4G0X9 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC40Q4G0X9 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
CCDC40Q4G0X9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
CCDC40Q4G0X9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC40Q4G0X9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC40Q4G0X9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC40Q4G0X9 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
CCDC40Q4G0X9 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC40Q4G0X9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC40Q4G0X9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
CCDC40Q4G0X9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.25■■□□□ 1.79
CCDC40Q4G0X9 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 GPX1-201ENST00000419349 1106 ntBASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC40Q4G0X9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.23■■□□□ 1.79
CCDC40Q4G0X9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC40Q4G0X9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.23■■□□□ 1.79
CCDC40Q4G0X9 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC40Q4G0X9 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC40Q4G0X9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
CCDC40Q4G0X9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.22■■□□□ 1.79
CCDC40Q4G0X9 RP9P-202ENST00000450133 1212 ntBASIC26.22■■□□□ 1.79
CCDC40Q4G0X9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC40Q4G0X9 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC40Q4G0X9 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC40Q4G0X9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.21■■□□□ 1.79
CCDC40Q4G0X9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
CCDC40Q4G0X9 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CCDC40Q4G0X9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC40Q4G0X9 AC093536.1-201ENST00000569153 554 ntBASIC26.2■■□□□ 1.78
CCDC40Q4G0X9 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC40Q4G0X9 AC097639.1-201ENST00000565519 1891 ntBASIC26.19■■□□□ 1.78
CCDC40Q4G0X9 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC26.19■■□□□ 1.78
CCDC40Q4G0X9 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
CCDC40Q4G0X9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.19■■□□□ 1.78
CCDC40Q4G0X9 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.19■■□□□ 1.78
CCDC40Q4G0X9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.19■■□□□ 1.78
CCDC40Q4G0X9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
CCDC40Q4G0X9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms