Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC28.31■■■□□ 2.12
CTCFP49711 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC28.31■■■□□ 2.12
CTCFP49711 RARRES2P11-201ENST00000635158 484 ntBASIC28.31■■■□□ 2.12
CTCFP49711 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CTCFP49711 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
CTCFP49711 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC28.3■■■□□ 2.12
CTCFP49711 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CTCFP49711 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC28.3■■■□□ 2.12
CTCFP49711 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CTCFP49711 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CTCFP49711 QDPR-206ENST00000508623 601 ntTSL 3 BASIC28.3■■■□□ 2.12
CTCFP49711 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC28.3■■■□□ 2.12
CTCFP49711 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CTCFP49711 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CTCFP49711 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CTCFP49711 MTDHP2-201ENST00000601468 714 ntBASIC28.29■■■□□ 2.12
CTCFP49711 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CTCFP49711 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CTCFP49711 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CTCFP49711 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CTCFP49711 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CTCFP49711 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
CTCFP49711 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC28.28■■■□□ 2.12
CTCFP49711 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC28.28■■■□□ 2.12
CTCFP49711 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CTCFP49711 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CTCFP49711 LSM4-201ENST00000252816 986 ntTSL 2 BASIC28.27■■■□□ 2.12
CTCFP49711 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CTCFP49711 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC28.27■■■□□ 2.12
CTCFP49711 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC28.27■■■□□ 2.12
CTCFP49711 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
CTCFP49711 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CTCFP49711 AC105265.2-201ENST00000467189 838 ntBASIC28.26■■■□□ 2.11
CTCFP49711 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CTCFP49711 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CTCFP49711 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CTCFP49711 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC28.25■■■□□ 2.11
CTCFP49711 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC28.25■■■□□ 2.11
CTCFP49711 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC28.25■■■□□ 2.11
CTCFP49711 AK3-203ENST00000447596 705 ntTSL 2 BASIC28.25■■■□□ 2.11
CTCFP49711 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC28.25■■■□□ 2.11
CTCFP49711 AC087623.3-201ENST00000607047 1098 ntBASIC28.24■■■□□ 2.11
CTCFP49711 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CTCFP49711 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC28.23■■■□□ 2.11
CTCFP49711 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC28.23■■■□□ 2.11
CTCFP49711 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CTCFP49711 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC28.22■■■□□ 2.11
CTCFP49711 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.22■■■□□ 2.11
CTCFP49711 AC120024.1-201ENST00000562672 995 ntBASIC28.22■■■□□ 2.11
CTCFP49711 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC28.22■■■□□ 2.11
CTCFP49711 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
CTCFP49711 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CTCFP49711 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
CTCFP49711 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.21■■■□□ 2.11
CTCFP49711 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.21■■■□□ 2.11
CTCFP49711 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC28.21■■■□□ 2.11
CTCFP49711 PLD4-205ENST00000553861 667 ntTSL 2 BASIC28.2■■■□□ 2.1
CTCFP49711 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CTCFP49711 UNC93B3-201ENST00000308076 687 ntBASIC28.19■■■□□ 2.1
CTCFP49711 EDA-201ENST00000338901 1233 ntBASIC28.19■■■□□ 2.1
CTCFP49711 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CTCFP49711 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.19■■■□□ 2.1
CTCFP49711 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC28.19■■■□□ 2.1
CTCFP49711 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC28.19■■■□□ 2.1
CTCFP49711 AL355001.2-201ENST00000620617 1191 ntBASIC28.19■■■□□ 2.1
CTCFP49711 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CTCFP49711 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC28.18■■■□□ 2.1
CTCFP49711 AL136162.1-201ENST00000607711 1078 ntBASIC28.18■■■□□ 2.1
CTCFP49711 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC28.18■■■□□ 2.1
CTCFP49711 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC28.18■■■□□ 2.1
CTCFP49711 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CTCFP49711 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC28.17■■■□□ 2.1
CTCFP49711 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
CTCFP49711 EXOG-217ENST00000630638 197 ntTSL 5 BASIC28.17■■■□□ 2.1
CTCFP49711 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC28.17■■■□□ 2.1
CTCFP49711 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
CTCFP49711 AL359504.2-201ENST00000605506 1601 ntBASIC28.16■■■□□ 2.1
CTCFP49711 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC28.16■■■□□ 2.1
CTCFP49711 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC28.15■■■□□ 2.1
CTCFP49711 RASSF1-AS1-201ENST00000629828 790 ntBASIC28.15■■■□□ 2.1
CTCFP49711 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
CTCFP49711 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CTCFP49711 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
CTCFP49711 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.14■■■□□ 2.1
CTCFP49711 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
CTCFP49711 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
CTCFP49711 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
CTCFP49711 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
CTCFP49711 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC28.13■■■□□ 2.09
CTCFP49711 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CTCFP49711 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC28.12■■■□□ 2.09
CTCFP49711 RBM38-205ENST00000440234 686 ntTSL 2 BASIC28.12■■■□□ 2.09
CTCFP49711 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC28.12■■■□□ 2.09
CTCFP49711 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
CTCFP49711 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
CTCFP49711 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.11■■■□□ 2.09
CTCFP49711 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CTCFP49711 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CTCFP49711 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC28.11■■■□□ 2.09
CTCFP49711 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms